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WGLab / PennCNV

Copy number vaiation detection from SNP arrays
http://penncnv.openbioinformatics.org
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PFB - PLINK #62

Open JFsanchezherrero opened 3 years ago

JFsanchezherrero commented 3 years ago

Hi @kaichop,

I was wondering if it would be ok to use PFB values generated for each SNP of interest using PLINK to calculate the B Allele frequency or is it mandatory to use compile_pb.pl script.

Thanks in advance, Jose

kaichop commented 3 years ago

Unless you know which allele is the "B" allele for each SNP, this will not work correctly.

On Tue, Dec 1, 2020 at 6:24 AM Jose Francisco Sanchez-Herrero < notifications@github.com> wrote:

Hi @kaichop https://github.com/kaichop,

I was wondering if it would be ok to use PFB values generated for each SNP of interest using PLINK to calculate the B Allele frequency or is it mandatory to use compile_pb.pl script.

Thanks in advance, Jose

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JFsanchezherrero commented 3 years ago

Great! Thanks!!

Best regards