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WGLab / PennCNV

Copy number vaiation detection from SNP arrays
http://penncnv.openbioinformatics.org
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question about calling CNV with tumor and normal-pair sample #85

Open lizhan96 opened 2 years ago

lizhan96 commented 2 years ago

Dear developer

I want to call CNV with my tumor sample(array data), and the normal-pair sample i had.

When I run the MoChA pipeline, some hg19/hg39 related files was needed.

Should I use the nomal sample related files as the input instead of that hg19/hg39 related files? Could you tell me which files I should change?

Thank you!