Hi. I use Annovar (version20.06.08) for annotation(VCF file)
command :
./table_annovar.pl ./CaseControl.vcf humandb/ -buildver hg19 -out ./Result -thread 10 -remove -protocol refGene,cytoBand,exac03,avsnp147,dbnsfp30a -operation gx,r,f,f,f -nastring . -polish -xref example/gene_xref.txt -vcfinput
I want to annotate the SNP, MNP, INDEL, CLUMPED, SV to create Case-Control study report.
Is there any way to annotate or classify that contents using command ?
Hi. I use Annovar (version20.06.08) for annotation(VCF file) command : ./table_annovar.pl ./CaseControl.vcf humandb/ -buildver hg19 -out ./Result -thread 10 -remove -protocol refGene,cytoBand,exac03,avsnp147,dbnsfp30a -operation gx,r,f,f,f -nastring . -polish -xref example/gene_xref.txt -vcfinput
I want to annotate the SNP, MNP, INDEL, CLUMPED, SV to create Case-Control study report. Is there any way to annotate or classify that contents using command ?