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WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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Polyphen2, Sift, etc filter-based annotation with annovar #157

Closed BeeSam-code closed 3 years ago

BeeSam-code commented 3 years ago

Hi,

Could someone help me figure out the correct command for filter-based annotation using polyphen2 and sift? Without the ljb23 files, I'm not sure how to approach this.

kaichop commented 3 years ago

use dbnsfp42a, which includes sift, polyphen and dozens of other scores.

On Wed, Aug 25, 2021 at 8:32 PM BeeSam-code @.***> wrote:

Hi,

Could someone help me figure out the correct command for filter-based annotation using polyphen2 and sift? Without the ljb23 files, I'm not sure how to approach this.

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BeeSam-code commented 3 years ago

Thank you Dr. Wang