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WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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Got a bug of the Func.refGeneWithVer #158

Open zhuying412 opened 3 years ago

zhuying412 commented 3 years ago

Version: $Date: 2020-06-08 00:46:07 -0400 (Mon, 8 Jun 2020) Commad: perl table_annovar.pl test.avinput humandb --outfile test --nastring . --remove --intronhgvs 50 --otherinfo --polish --buildver hg19 --protocol refGeneWithVer --operation g --argument '--hgvs' avinput Variant: 3 15686464 15686464 C T

I got the below result. why there is no "exonic" in Func.refGeneWithVer?

Chr: 3 Start: 15686464
End: 15686464
Ref: C Alt: T Func.refGeneWithVer: intron
Gene.refGeneWithVer: BTD;BTD GeneDetail.refGeneWithVer: BTD;BTD NM_001370752.1:exon4:c.1015+26C>T ExonicFunc.refGeneWithVer: synonymous SNV AAChange.refGeneWithVer: BTD:NM_001281723.3:exon4:c.1041C>T:p.G347G,BTD:NM_001281725.2:exon4:c.1041C>T:p.G347G,BTD:NM_001370658.1:exon4:c.1041C>T:p.G347G,BTD:NM_001323582.1:exon5:c.1041C>T:p.G347G,BTD:NM_001281724.3:exon6:c.1041C>T:p.G347G