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WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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"hg19_refGeneWithVer" database download issue #174

Closed tahirasma closed 2 years ago

tahirasma commented 2 years ago

Greetings!

Kindly be informed that I am trying to download the database hg19_refGeneWithVer by the following command:

./annotate_variation.pl -buildver hg19 -downdb -webfrom annovar refGeneWithVer humandb/

But it is downloading as follows:

NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg19_refGene.txt.gz ... OK
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg19_refGeneMrna.fa.gz ... OK
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg19_refGeneVersion.txt.gz ... OK
NOTICE: Uncompressing downloaded files
NOTICE: Finished downloading annotation files for hg19 build version, with files saved at the 'humandb' directory

It is downloading the normal hg19_refGene file but not with the version numbers.

Looking for your kind assistance.

Regards,

tahirasma commented 2 years ago

A kind reminder. Thanks.

kaichop commented 2 years ago

Hi tahirasma, I remember the files are actually directly included in ANNOVAR package, but perhaps not as updated as when you download from annovardb. But in any case, you can just use do a "wget" on the two files directly: http://www.openbioinformatics.org/annovar/download/hg19_refGeneWithVerMrna.fa.gz, http://www.openbioinformatics.org/annovar/download/hg19_refGeneWithVer.txt.gz

tahirasma commented 2 years ago

Thanks for the reply. Successfully downloaded the files. Thanks