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doc-ANNOVAR
Documentation for the ANNOVAR software
http://annovar.openbioinformatics.org
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Error running system commands
#215
surakshavinod
closed
1 year ago
5
how to get the transcription start site?
#214
caiji-lh
closed
1 year ago
1
error
#213
Ramita2320
opened
1 year ago
1
Db Download Error
#212
faramarzgsm
opened
1 year ago
3
frameshift insertion HGVS different protein position between Annovar and VEP
#211
RysBen
opened
1 year ago
2
Downloads for ensGene, ensGene40 for hg38 no longer work
#210
slagelwa
closed
1 year ago
1
About HGVS 'NM_172351.3:exon13:c.1176-16A>G'
#209
haiwufan
opened
1 year ago
0
Annotation values equal to "0" converted as missing in the output when using table_annovar.pl
#208
teone182
opened
1 year ago
1
Annotation of exon-intron junction variant
#207
Bin-Guan
closed
1 year ago
2
Argument "T" isn't numeric in **exac03** file
#206
xiucz
opened
1 year ago
2
About SVs annotation by using annovar
#205
yshcai
opened
1 year ago
0
Installing as module on HPC
#204
amy-houseman
opened
2 years ago
1
Error when using table_annovar.pl
#203
edmondwonkam
opened
2 years ago
0
IMPACT categories HIGH, MODERATE, LOW, MODIFIER - VEP vs snpEff vs ANNOVAR
#202
robertzeibich
opened
2 years ago
2
rmsk annotation source cant be downloaded
#201
yangyxt
opened
2 years ago
2
About: Error running system command: <coding_change.pl
#200
ClarenceHsiang
opened
2 years ago
0
A problem in using hg19_snp138.txt
#199
SYSUMSD
opened
2 years ago
2
INDEL, CNV and structural variation in ANNOVAR
#198
Shicheng-Guo
opened
2 years ago
0
Can annovar do structural variants annotations?
#197
akhilpampana
opened
2 years ago
2
annotate_variation.pl fails to download files
#196
cjyoon
opened
2 years ago
5
hg19_refGeneWithVer.txt.idx.gz ... Failed...help me!
#195
mlt0715
opened
2 years ago
1
NM_000314.6:exon3:c.209+1->T
#194
asmlgkj
opened
2 years ago
0
annovar annotated, but no record in clinvar online
#193
asmlgkj
opened
2 years ago
4
Issue in creating Database using ANNOVAR
#192
BiodeB
closed
2 years ago
7
NOTICE: output files will be written to .<samplename>.avinput， cannot write to outfile
#191
sakhdbx
opened
2 years ago
2
HGVSC position didn't match its HGVSP
#190
pegasusCN
opened
2 years ago
0
parse clinvar xml by annovar
#189
asmlgkj
closed
2 years ago
2
base annotation shorter than variant
#188
asmlgkj
opened
2 years ago
10
How to make tfbsConsSites and targetScanS for hg38
#187
hanguojun007
opened
2 years ago
2
How Annovar handles * in ALT fields
#186
kvn95ss
opened
2 years ago
4
The results of the annotate_variation and coding_change do not match
#185
wt12318
opened
2 years ago
0
Error running system command: <annotate_variation.pl -geneanno -buildver genome -dbtype refGene -outfile chr7_2_1.refGene -exonsort chr7_2.avinput ../../../annovar/chr7_2/>
#184
Jiangjiangzhang6
opened
2 years ago
1
convert2annovar.pl create empty file
#183
CLAIRE-cuhk
opened
2 years ago
2
Preparing cosmicV95 fails
#182
nurmians
closed
1 year ago
5
Converting annotated VCF to txt file
#181
kvn95ss
closed
2 years ago
2
is indel splicing annotation meets the specifications HGVS？
#180
zhuying412
opened
2 years ago
0
PolyPhen and CADD annotations not available.
#179
kruthikaiyer0990
closed
2 years ago
1
add FATHMM prediction Neutral (score 0.02)
#178
asmlgkj
opened
2 years ago
0
could the 1000 Genomes Project dataset be used to annotate WES data?
#177
stroke1989
opened
2 years ago
1
Not able to download hg19_gerp++elem.txt.idx.gz
#176
agarwalsurbhi
closed
2 years ago
2
how to get ENSG id using annovar annotation
#175
stroke1989
opened
2 years ago
1
"hg19_refGeneWithVer" database download issue
#174
tahirasma
closed
2 years ago
3
NM_005636.3 has 2 lines in hg19_refGeneWithVer.txt
#173
asmlgkj
opened
2 years ago
0
Why dose convert2annovar.pl remove non-reference genotypes sites ?
#172
chenqing-1996
opened
2 years ago
1
Filter-based annotation on vcf file with custom-made annotation file
#171
se2cheeese
opened
2 years ago
1
there was not H3F3A in the latest released refGene-hg19, BUT had H3-3A
#170
stroke1989
opened
2 years ago
0
Annotation - hg38 annotated my.vcf file not matching TxDb.Hsapiens.UCSC.hg38.knownGene in variant plotting using Lolliplot.
#169
smeeta
opened
3 years ago
0
-thread option slows annotation
#168
AndreaG5
opened
3 years ago
0
termination sometimes is X ,sometimes is *
#167
asmlgkj
opened
3 years ago
0
Update database `refGeneWithVer`
#166
ice1ce
closed
3 years ago
4
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