WGLab doc-ANNOVAR issues

WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software

http://annovar.openbioinformatics.org

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issues

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prepare new cosmic data

#165 asmlgkj opened 3 years ago
1
maybe an strange annotation of annovar

#164 asmlgkj closed 3 years ago
2
NM_004260:exon14:c.2296+1C>-;NM_004260:exon15:c.2297-1C>-

#163 asmlgkj closed 3 years ago
1
ERROR: transcript end (1235) for NM_032454.1 is longer than transcript length 444, skipping this transcript

#162 asmlgkj closed 3 years ago
4
issues using GDI database

#161 aminhaghparast opened 3 years ago
1
Not gathering all the information for a set of variants

#160 agarwalsurbhi opened 3 years ago
1
The detail version or url for human gene annotation used in annovar

#159 sssimonyang closed 3 years ago
4
Got a bug of the Func.refGeneWithVer

#158 zhuying412 opened 3 years ago
0
Polyphen2, Sift, etc filter-based annotation with annovar

#157 BeeSam-code closed 3 years ago
2
How to use "-exonicsplicing" argument?

#156 deb0612 opened 3 years ago
2
How to separate output lines by gene

#155 zhuying412 opened 3 years ago
1
mitimpact24 cannot be download

#154 MingchenInSZ opened 3 years ago
0
Is the Openbioinformatics site down?

#153 ahdee closed 3 years ago
0
Does ANNOVAR support UniProt variation database?

#152 lincj1994 opened 3 years ago
0
Suggestion to add the number of mutated exon/the number of total exons of a gene.

#151 lincj1994 closed 3 years ago
1
Annotating CNVs

#150 kghimire09 opened 3 years ago
0
Interpret function annotation in the output

#149 wshuai294 closed 3 years ago
1
Unable to download a number of files

#148 lwtan90 opened 3 years ago
2
What situation will causal annovar take a variants as "invalid_input" ?

#147 Shicheng-Guo opened 3 years ago
3
c.921delA:p.D308Tfs*33 or *34

#146 worker000000 opened 3 years ago
1
p.C2546X is p.C2546* in hgvs

#145 worker000000 opened 3 years ago
0
cytoBand annotation Bug?

#144 xiucz opened 3 years ago
1
Indel classification conversion

#143 faraz89 opened 3 years ago
6
How to create custom `region-based` db and use it in `table_annovar.pl` command

#142 Shicheng-Guo opened 3 years ago
3
Error: the required database file /humandb/hg38_demo.txt does not exist.

#141 Shicheng-Guo opened 3 years ago
2
Error: unable to find start site from input line <Binary file hg38_grasp2.txt matches>

#140 Shicheng-Guo opened 3 years ago
1
"chr1" vs "1" in annotation file

#139 Shicheng-Guo opened 3 years ago
1
personalized "gwasCatalog" in ANNOVAR

#138 Shicheng-Guo opened 3 years ago
3
hg38_gnomad_genome.txt

#137 Shicheng-Guo opened 3 years ago
7
How to get the expected ratio of a specific genomic region in genome background from annovar database?

#136 zengxi-hada opened 3 years ago
2
Multiallelic SNPs termed invalid - Unknown function for all "exonic" variants

#135 AlexFryd opened 3 years ago
4
index perl script for CADD hg38 annotation

#134 Shicheng-Guo opened 3 years ago
2
CNV annotations.

#133 kghimire09 opened 3 years ago
2
Cosmic v90 normalization MNVs

#132 roselucia opened 3 years ago
0
Errors of table_annovar.pl

#131 xiw588 opened 3 years ago
8
Creating index of hg19_dbnsfp41a

#130 ngslabex closed 3 years ago
2
Versioning

#129 roselucia closed 3 years ago
5
lose some transcript in annotation result

#128 lvmt opened 3 years ago
1
Incorporating a custom db to annovar annotation (CADD-SpliceAI)

#127 kvn95ss closed 3 years ago
9
Custom filtering

#126 xiw588 opened 3 years ago
1
formatting changes

#125 ashishjayamohan closed 1 year ago
0
typo fix

#124 ashishjayamohan closed 3 years ago
0
cosmic92 LEGACY_MUTATION_ID

#123 rabiyung opened 3 years ago
0
issue with downloading latest clinvar file

#122 atimms closed 3 years ago
2
wrong column number of abraom annotation

#121 hurleyLi opened 3 years ago
8
Annovar does not find mrna sequences

#120 Kaskere closed 3 years ago
1
No annotate_variation file output

#119 sunshichao0916 opened 3 years ago
0
Strand specifcity of Variants in the Output

#118 arumds opened 3 years ago
1
SNP, MNP, INDEL classification

#117 jjlee93 closed 3 years ago
0
unable to download latest annovar

#116 cb4github opened 3 years ago
1

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