WGLab doc-ANNOVAR issues

WGLab / doc-ANNOVAR

Documentation for the ANNOVAR software

http://annovar.openbioinformatics.org

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issues

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using variants_reduction.pl for canFam genome

#115 golrokh51 opened 4 years ago
0
The parameter --separate in table_annovar.pl

#114 YongchaoDou closed 4 years ago
0
Fields altered in the output in table format

#113 jfnavarro closed 4 years ago
9
Update filter.md

#112 SanderJBouwman closed 4 years ago
0
About the training set of "dbnsfp30a"

#111 realdwang closed 4 years ago
1
Proposal / Suggestion: Integrate findBASE in ANNOVAR

#110 tahirasma opened 4 years ago
1
prediction of novel vrariants

#109 bushrabibi closed 4 years ago
0
prediction of novel variants

#108 bushrabibi closed 4 years ago
3
Minor typo

#107 lassefolkersen closed 4 years ago
1
Special characters in *_refGene.txt causing invaild record error

#106 xin-huang closed 3 years ago
8
cannot find hg38 version gerp++elem.txt.gz and cannot download hg19 version gerp++elem.txt.gz any more

#105 avenise opened 4 years ago
1
Need help annotating of non coding regions

#104 ghausiabegum closed 4 years ago
0
how to build a database of a genome for which there is no downloadable database available?

#103 ga23981 opened 4 years ago
0
Invalid record found in refgene file

#102 ga23981 closed 4 years ago
2
Help!!! Error: invalid record found in exonic_variant_function file (exonic format error): <line73

#101 jigaoxiang opened 4 years ago
13
Please update prepare_annovar_user for COSMIC v.91-92

#100 RKV82 closed 4 years ago
5
Different annovar version result in different position of aachange! How does that happened?

#99 Bio-MingChen closed 4 years ago
4
invalid triplets found in DNA sequence to be translated

#98 CongqianyouYz opened 4 years ago
0
Exonic variants are in the variant_function while the exonic_variant_function is empty.

#97 Jiny000 opened 4 years ago
3
Need help on annotation of a file

#96 amrita1983 opened 4 years ago
1
Change in CHROM, INFO and FORMAT fields

#95 moneterg opened 4 years ago
0
-neargene parameter

#94 arumds closed 4 years ago
1
HGVS Annotation Standards

#93 crutching opened 4 years ago
0
coding_change.pl Lacks A Labelled Indel-caused Stop-Gain Example

#92 DarioS opened 4 years ago
0
dbnsfp output - 55 columns

#91 davidklinzing opened 4 years ago
1
CADD score hg38

#90 hurleyLi opened 4 years ago
0
Some database index files can't be downloaded

#89 davidklinzing opened 4 years ago
6
hg38 revel gz file damaged

#88 blueivy1117 opened 4 years ago
0
update the dbNSFP4 database in ANNOVAR

#87 ruslan-abasov opened 4 years ago
0
hg19_snp138.txt in dbSNP identifiers based filtering is not found

#86 Shicheng-Guo opened 4 years ago
3
downdb of snp135NonFlagged: not works

#85 Shicheng-Guo opened 4 years ago
1
Which score is chosen when multiple prediction score are annotated with dbNSFP3.5?

#84 roselucia opened 4 years ago
0
Cosmic Annotation is not parsed correctly

#83 roselucia closed 4 years ago
2
Cosmicv90 Warning prepare_annovar_user.pl

#82 roselucia closed 5 years ago
2
Download and unpack Annovar tar xvfz annovar.latest.tar.gz

#81 roselucia closed 5 years ago
1
Error: invalid record (>=11 fields expected in OMIM gene definition file)

#80 hamidqaedi closed 5 years ago
4
Annovar Download Database Error "unexpected end of file", "uncompress failed"

#79 roselucia closed 5 years ago
10
Software downloading error

#78 xiucz closed 5 years ago
1
Please update cosmic90 prepare_annovar_user.pl

#77 xiucz closed 5 years ago
1
Convert2Annovar produces empty file?

#76 vymao closed 5 years ago
3
Argument "G" isn't numeric in numeric eq....

#75 hamidqaedi closed 5 years ago
4
Is the same default precedence used for refgene and ensgene annotation? Can one annoyed Sequence Ontology Terms?

#74 roselucia closed 5 years ago
3
Which score is chosen when multiple prediction score are annotated with dbNSFP3.0?

#73 roselucia closed 5 years ago
6
Getting zygosity (HOM or HET) in a column in txt output

#72 hamidqaedi closed 5 years ago
2
Intermittent lines in output VCF have missing CHROM field

#71 OgnjenMilicevic closed 5 years ago
1
table_annovar.pl 添加 HGVS 注释

#70 solivehong closed 5 years ago
8
annovar frameshift deletion issue

#69 fengdong110 closed 5 years ago
4
Internal sever error when trying to downlaod prepare_annovar_user.pl

#68 phansol closed 5 years ago
1
error when loading file

#67 elmav closed 5 years ago
1
gnomad_exome and gnomad_genome not updated (still 2017)?

#66 scchess closed 5 years ago
2

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