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WU-BIMAC / NBOMicroscopyMetadataSpecs

The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration with the BINA Data Management and Quality Control Working Group (https://www.bioimagingna.org/qc-dm-wg) for documenting microscopy experiments and assessing the quality of image data.
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STRAMBIO/NITSCHKE -- MODIFY SAMPLE POSITIONING STRUCTURE #48

Open strambc opened 3 years ago

strambc commented 3 years ago

Element name(s): SamplePositioningGroup

Justification for the addition (brief and compelling): This proposed change arose from a discussion with Roland Nitschke It was brought to our attention that the current model does not correctly capture common situations.

Specific issues encountered:

1) The name MechanicalStage appears to be misleading because people may not include a MotorizedStage to be part of this group. Might be a better idea to have three explicit types:

  1. Piezo
  2. Manual
  3. Motorized

2) A StageInsert might be used for Focusing (only Z-movement) and be motorized and/or piezoelectric (this was actually the way we had the model in v01-07 so take a look at that version)

Full description of the proposed addition (enough detail to implement): The actual changes will be discussed in an ad hoc meeting with different stakeholders including members of the QUAREP-LiMi WG on sample positioning calibration

strambc commented 2 years ago

Other major issue encountered:

Order of Fields is really not optimal and forces users to jump around a lot in an illogical manner.