Open SheepwormJM opened 2 months ago
It reverse-complements the sequence.
On Wed, Jun 19, 2024, 2:11 PM SheepwormJM @.***> wrote:
Hi,
Just a quick check question: In your manual here ( https://warrenlab.github.io/agptools/) you say that flip will reverse-complement a sequence in the scaffold to re-orient a misassembled piece.
But does it complement the sequence, or just reverse it?
Thanks, Jenni
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Thanks Edward. Why does it complement it and not just reverse the sequence? I'm just thinking about the impact of this on reading genes.
To reverse-complement a sequence is to both reverse and complement it
On Wed, Jun 19, 2024, 3:03 PM SheepwormJM @.***> wrote:
Thanks Edward. Why does it complement it and not just reverse the sequence? I'm just thinking about the impact of this on reading genes.
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Hi,
Just a quick check question: In your manual here (https://warrenlab.github.io/agptools/) you say that flip will reverse-complement a sequence in the scaffold to re-orient a misassembled piece.
But does it complement the sequence, or just reverse it?
Thanks, Jenni