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Xinglab / TideHunter

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
https://github.com/yangao07/TideHunter
MIT License
20 stars 2 forks source link

Tidehunter failed to produce consensus sequences #15

Closed jacopoM28 closed 2 years ago

jacopoM28 commented 2 years ago

Hi everyone,

I builded Tidehunter V. 1.5.3 from source files but when I try to generate consensus sequences from a set of HiFi PacBio reads Tidehunter raise the error 'No enough sequences to perform msa'. If I only generate unit sequences it works well. Any advice?Thanks in advance.

Jacopo

yangao07 commented 2 years ago

Hi Jacopo,

Please try out the latest v1.5.4, it should solve this problem. It may not be available from conda now, you can install it from source or download the binary file of TideHunter.

Yan

jacopoM28 commented 2 years ago

Thank you for the fast reply, with the new version everything work well!

algaebrown commented 1 year ago

Can you release v1.5.4 on conda too? Thanks

yangao07 commented 1 year ago

Not sure why it wasn't automatically updated. I just made the pull request, need to wait for it to be approved.

yangao07 commented 1 year ago

The v1.5.4 in conda is updated.

algaebrown commented 1 year ago

Thank you! On Apr 23, 2023, 8:32 AM -0700, Yan Gao @.***>, wrote:

The v1.5.4 in conda is updated. — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>