Closed kopardev closed 3 years ago
I think the issue relates to hyphens in my reference sequences' ids. I have ERCC sequences in my reference and they all have a hyphen in their ids, eg. ERCC-0002. I am trying to replace the hyphen with underscore to get around this issue.
Here is the Traceback of my error:
This is actually generated by CLEAR, but it seems like a circExplorer2 error where -t
Tophat-fusion
is not able to parse the bam file correctly.