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YangLab / CIRCexplorer2

circular RNA analysis toolset
http://circexplorer2.readthedocs.org/
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CIRCexplorer2 parse Converted 0 fusion reads! #52

Open JianGuoZhou3 opened 3 years ago

JianGuoZhou3 commented 3 years ago

Hi @kepbod, I found one of my datasets (phs001680/PRJNA48954) didn't convert any fusion reads! my code is:

CIRCexplorer parameters: /home/zhou/miniconda2/envs/cir2/bin/CIRCexplorer2 parse -t STAR /home/zhou/raid/ncbi/dbGaP-24835/RNA_phs001680_PRJNA489548/CircRNA/STAR/SRR8992923/SRR8992923_Chimeric.out.junction -b /home/zhou/raid/ncbi/dbGaP-24835/RNA_phs001680_PRJNA489548/CircRNA/parse/SRR8992923_back_spliced_junction.bed
Start CIRCexplorer2 parse at 06:17:36
Start parsing fusion junctions from STAR...
Converted 0 fusion reads!
End CIRCexplorer2 parse at 06:17:39

However, NCLscan was worked. Other datasets were worked on by CIRCexplorer.