my task is to compute the coverage from the tophat2 accepted_hits.bam with the back_spliced_junction.bed, but I don´t know if the results I got from...
...are right. Can someone explain me what the columns after the first three [chrom, start, end] ones describe? Or does someone know if they are even used by samtools?
Hi,
my task is to compute the coverage from the tophat2 accepted_hits.bam with the back_spliced_junction.bed, but I don´t know if the results I got from...
samtools depth -H -o Coverage/cov_TT17 -b back_spliced_junction.bed accepted_hits.bam
...are right. Can someone explain me what the columns after the first three [chrom, start, end] ones describe? Or does someone know if they are even used by samtools?