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YeoLab
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clipper
A tool to identify CLIP-seq peaks
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min_width, max_width not taken into account
#118
VandaLovejoy
opened
2 months ago
0
Clipper does not output anything
#117
ramirobarrantes
opened
3 months ago
0
invalid contig chr3
#116
tslzs
opened
1 year ago
0
reverse_strand argument for seCLIP peaks?
#115
arun-krishnaraj
opened
1 year ago
0
Move `data` outside of CLIPper such that users can easily make different reference w/o re-installing
#114
algaebrown
closed
1 year ago
4
Problem using Clipper with a cytoplasmic RBP that binds to spliced mRNA
#113
Braulium
opened
1 year ago
0
Exception errors when running pool.py (list index out of range)(SOVLED)
#112
zhaoshuoxp
closed
1 year ago
1
How to know the peaks called after clipper
#111
ELMMA-FUNNY
opened
2 years ago
3
why poisson_cutoff not actually used in call_peak.py since it is an additional significance filtering based on count
#110
HUNNNGRY
opened
2 years ago
0
A solution to core dumped and/or running too slow
#109
YichaoOU
opened
2 years ago
2
fix index out of range
#108
kstangline
closed
2 years ago
0
Runtime of CLIPer?
#107
mhorlacher
opened
2 years ago
3
CLIPper runs forever for empty bam files
#106
algaebrown
opened
2 years ago
0
CLIPper complains file does not exist while it obviously exists
#105
algaebrown
opened
2 years ago
2
Update peaksmodule.cc
#104
y9c
opened
2 years ago
0
clipper displays unusual help messages and can't be used
#103
kerenzhou062
opened
2 years ago
9
pre-mRNA option not working?
#102
jmcalabr
closed
2 years ago
1
Main.py fails to import call_peaks.py, prints usage for peaksmodule.cc instead
#101
lee-van
opened
2 years ago
2
Remove PCR duplicates using barcode_collapse_pe.py or picard?
#100
amdreamer
closed
2 years ago
1
clipperhelper
#99
kopardev
closed
2 years ago
1
Multiple fragmented peaks where single peak expected
#98
omarwagih
opened
3 years ago
0
error with clipper and scipy version
#97
byee4
opened
3 years ago
0
Issue processing bam file (index out of error)
#96
omarwagih
closed
3 years ago
6
error on main.py
#95
alexmondaini
closed
3 years ago
2
Run test ERROR: python -m unittest discover ; The following error is reported. Can the clipper still be used normally
#94
geng-lee
opened
3 years ago
3
Invalid contig error
#93
jalalsiddiqui
opened
3 years ago
9
pip install clipper --user
#92
jalalsiddiqui
opened
3 years ago
2
Having trouble installing clipper
#91
jalalsiddiqui
opened
3 years ago
2
Clipper installation fails
#90
ekfiagbedzi
opened
3 years ago
3
Install Clipper via Conda
#89
gpratt
opened
3 years ago
1
'Segmentation fault' issue
#88
dahun73
opened
3 years ago
13
Clipper doesn't recognize contigs from GRCh38, even with GRCh38 given as species
#87
MattBrauer
closed
3 years ago
11
`clipper -h` fails after clean install
#86
MattBrauer
opened
3 years ago
6
Save pickle don’t work
#85
algaebrown
closed
3 years ago
0
clipper -h with differerent help documentation
#84
junjunlab
closed
4 years ago
1
clipper -h
#83
junjunlab
opened
4 years ago
2
CLIPper doesn't work with a different help document.
#82
IrisWEI-1996
opened
4 years ago
11
rmdup software
#81
yx-xu
closed
4 years ago
3
Charlene py3
#80
algaebrown
closed
4 years ago
0
invalid contig error when running clipper on dm3
#79
jkkbuddika
opened
4 years ago
1
License to integrate it into conda and galaxy
#78
heylf
closed
4 years ago
1
About "--bonferroni -- superlocal"
#77
Li-Yupeng
closed
4 years ago
1
chrM error
#76
tianxiahuihui
opened
4 years ago
5
clipper installation error
#75
zhenzhenyang-psu
closed
4 years ago
2
Clipper with non model organisms
#74
matthew-valentine
opened
4 years ago
3
ValueError: hg19.AS.STRUCTURE.COMPILED.gff.AS.STRUCTURE.COMPILED.gff does not exist
#73
maheshmathe
closed
4 years ago
0
ERROR:root:failed to build spline
#72
b3b3gg
closed
4 years ago
5
install failed
#71
lll16
closed
4 years ago
3
Value error: invalid contig
#70
njaberi
closed
5 years ago
0
clipper -h failed
#69
lmanchon
closed
4 years ago
5
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