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YeoLab / flotilla

Reproducible machine learning analysis of gene expression and alternative splicing data
http://yeolab.github.io/flotilla/docs
BSD 3-Clause "New" or "Revised" License
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Feature Subset excluding pseudogenes #214

Closed LeenMachine closed 9 years ago

LeenMachine commented 9 years ago

Due to multi-mapping, many calls for pseudogenes may be made in the data. It would be nice if there was a good set of non-pseudogenes, currently is there one that exists? I have made my own based on gencode annotations.

olgabot commented 9 years ago

The gencode annotation is probably what we'd use to create a pseudogenes subset. We'll look into adding it to the hg19 and mm10 annotations