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YeoLab / outrigger

Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
http://yeolab.github.io/outrigger/
BSD 3-Clause "New" or "Revised" License
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Confusions about the contents of events.csv #92

Closed mouni521 closed 3 years ago

mouni521 commented 5 years ago

Hi, I have confusions about the report in the events.csv file. In my opinion, Isoform and transcript_id seem to be an injective function. Below is part of contents in the events.csv. 1542864585419 The transcript_id for isoform1 are NM_001034025 & NM_006817, for isofrom2 is only NM_006817. I have checked the annotation file and then sorted out the information below. 1542866799771 My question is why isoform1's transcript_id has 2 reports : NM_001034025 & NM_006817, not only NM_001034025 (exclusive). This makes me really confused.

Tiffany