DEqMS.build

[Yikun]

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DEqMS
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* checking for file ‘DEqMS/DESCRIPTION’ ... OK
* preparing ‘DEqMS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DEqMS-package-vignette.Rmd’ using rmarkdown
trying URL 'https://ftp.ebi.ac.uk/pride-archive/2016/06/PXD004163/Yan_miR_Protein_table.flatprottable.txt'
Content type 'text/plain; charset=UTF-8' length 3515045 bytes (3.4 MB)
==================================================
downloaded 3.4 MB

trying URL 'https://ftp.ebi.ac.uk/pride-archive/2014/09/PXD000279/proteomebenchmark.zip'
Content type 'application/zip' length 38428469 bytes (36.6 MB)

downloaded 437 KB

Quitting from lines 227-230 (DEqMS-package-vignette.Rmd) 
Error: processing vignette 'DEqMS-package-vignette.Rmd' failed with diagnostics:
download from 'https://ftp.ebi.ac.uk/pride-archive/2014/09/PXD000279/proteomebenchmark.zip' failed
--- failed re-building ‘DEqMS-package-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘DEqMS-package-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted

[martin-g]

The connection to this server is very slow. I just tried it on that machine and it shows up to 5KB/s. I will download it and add it to the local HTTPD.

[martin-g]

The local proxy approach won't work because curl uses HTTPS connection and using a self-signed certificate is not allowed.