Yikun / BBS

The Bioconductor Build System
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genotypeeval.check #44

Closed Yikun closed 11 months ago

Yikun commented 1 year ago
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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:genotypeeval.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings genotypeeval_1.31.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/genotypeeval.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘genotypeeval/DESCRIPTION’ ... OK
* this is package ‘genotypeeval’ version ‘1.31.1’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package suggested but not available: ‘SNPlocs.Hsapiens.dbSNP141.GRCh38’

The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/genotypeeval.Rcheck/00check.log’
for details.
martin-g commented 1 year ago

Same failure on x86_64 : https://bioconductor.org/checkResults/3.17/bioc-LATEST/genotypeeval/nebbiolo1-checksrc.html

martin-g commented 11 months ago

Package genotypeeval has been deprecated in 3.17 and removed in 3.18