where can I get more information about labeled_reactions?

YosefLab / Compass

In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

BSD 3-Clause "New" or "Revised" License

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where can I get more information about labeled_reactions? #87

Open qiuju-Zhang opened 1 year ago

qiuju-Zhang commented 1 year ago

when I study the "Compass Analysis" notebook about analyzing the results of the compass algorithm and replicates figures 2E and 2C from the paper, I found some prior knowledge called "labeled_reaction" was used here.

Now, I wanna do more analysis on my own compass results, so I need to get more similar knowledge, could you please tell me where can I get them?

agirgis3 commented 1 year ago

Hi there Quiju, try looking at the metadata in this directory and see if it provides what you need: This file provides metadata on the RECON2 metabolic map - only relevant if that was the model you used to run Compass. /Compass/tree/master/compass/Resources/Metabolic Models/RECON2_mat/model)/rxnMeta.txt