JensBlack
commented
1 year ago Hi,
Thanks for reaching out and trying out A-SOiD.
ERROR: Failed building wheel for hdbscan
It looks like you had an issue with installing hdbscan. Can you check this solution Here and report whether the additional installation of hdbscan works for you?
Hi,
I am trying to install A-SOID but get this error message. I appreciate your help.
(asoid) PS C:\Apps\A-SOID> pip install . Processing c:\apps\a-soid Preparing metadata (setup.py) ... done Collecting matplotlib Using cached matplotlib-3.6.2-cp38-cp38-win_amd64.whl (7.2 MB) Collecting numpy Using cached numpy-1.24.1-cp38-cp38-win_amd64.whl (14.9 MB) Collecting pandas Using cached pandas-1.5.2-cp38-cp38-win_amd64.whl (11.0 MB) Collecting seaborn Using cached seaborn-0.12.2-py3-none-any.whl (293 kB) Collecting streamlit~=1.11.0 Using cached streamlit-1.11.1-py2.py3-none-any.whl (9.1 MB) Collecting streamlit_option_menu Using cached streamlit_option_menu-0.3.2-py3-none-any.whl (712 kB) Collecting hydralit Using cached hydralit-1.0.14-py3-none-any.whl Collecting opencv-python Using cached opencv_python-4.7.0.68-cp37-abi3-win_amd64.whl (38.2 MB) Collecting tqdm Using cached tqdm-4.64.1-py2.py3-none-any.whl (78 kB) Collecting stqdm Using cached stqdm-0.0.5-py3-none-any.whl (11 kB) Collecting scikit-learn Using cached scikit_learn-1.2.0-cp38-cp38-win_amd64.whl (8.2 MB) Collecting h5py Using cached h5py-3.7.0-cp38-cp38-win_amd64.whl (2.6 MB) Collecting plotly Using cached plotly-5.11.0-py2.py3-none-any.whl (15.3 MB) Collecting pillow Using cached Pillow-9.4.0-cp38-cp38-win_amd64.whl (2.5 MB) Collecting joblib Using cached joblib-1.2.0-py3-none-any.whl (297 kB) Collecting scipy Using cached scipy-1.10.0-cp38-cp38-win_amd64.whl (42.2 MB) Collecting ipython Using cached ipython-8.8.0-py3-none-any.whl (775 kB) Collecting psutil Using cached psutil-5.9.4-cp36-abi3-win_amd64.whl (252 kB) Collecting numba Using cached numba-0.56.4-cp38-cp38-win_amd64.whl (2.5 MB) Collecting hdbscan Using cached hdbscan-0.8.29.tar.gz (5.2 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Preparing metadata (pyproject.toml) ... done Requirement already satisfied: setuptools in c:\users\km195\anaconda3\envs\asoid\lib\site-packages (from asoid==0.2.0) (65.6.3) Collecting umap-learn Using cached umap_learn-0.5.3-py3-none-any.whl Collecting click Using cached click-8.1.3-py3-none-any.whl (96 kB) Collecting moviepy Using cached moviepy-1.0.3-py3-none-any.whl Collecting packaging>=14.1 Using cached packaging-23.0-py3-none-any.whl (42 kB) Collecting requests>=2.4 Using cached requests-2.28.1-py3-none-any.whl (62 kB) Collecting tornado>=5.0 Using cached tornado-6.2-cp37-abi3-win_amd64.whl (425 kB) Collecting watchdog Using cached watchdog-2.2.1-py3-none-win_amd64.whl (78 kB) Collecting tzlocal>=1.1 Using cached tzlocal-4.2-py3-none-any.whl (19 kB) Collecting typing-extensions>=3.10.0.0 Using cached typing_extensions-4.4.0-py3-none-any.whl (26 kB) Collecting python-dateutil Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) Collecting blinker>=1.0.0 Using cached blinker-1.5-py2.py3-none-any.whl (12 kB) Collecting attrs>=16.0.0 Using cached attrs-22.2.0-py3-none-any.whl (60 kB) Collecting pydeck>=0.1.dev5 Using cached pydeck-0.8.0-py2.py3-none-any.whl (4.7 MB) Collecting protobuf<4,>=3.12 Using cached protobuf-3.20.3-cp38-cp38-win_amd64.whl (904 kB) Collecting cachetools>=4.0 Using cached cachetools-5.2.1-py3-none-any.whl (9.3 kB) Collecting semver Using cached semver-2.13.0-py2.py3-none-any.whl (12 kB) Collecting altair>=3.2.0 Using cached altair-4.2.0-py3-none-any.whl (812 kB) Collecting gitpython!=3.1.19 Using cached GitPython-3.1.30-py3-none-any.whl (184 kB) Collecting rich>=10.11.0 Using cached rich-13.0.1-py3-none-any.whl (238 kB) Collecting pympler>=0.9 Using cached Pympler-1.0.1-py3-none-any.whl (164 kB) Collecting validators>=0.2 Using cached validators-0.20.0-py3-none-any.whl Collecting pyarrow>=4.0 Using cached pyarrow-10.0.1-cp38-cp38-win_amd64.whl (20.3 MB) Collecting importlib-metadata>=1.4 Using cached importlib_metadata-6.0.0-py3-none-any.whl (21 kB) Collecting toml Using cached toml-0.10.2-py2.py3-none-any.whl (16 kB) Collecting colorama Using cached colorama-0.4.6-py2.py3-none-any.whl (25 kB) Collecting pytz>=2020.1 Using cached pytz-2022.7-py2.py3-none-any.whl (499 kB) Collecting cython>=0.27 Using cached Cython-0.29.33-py2.py3-none-any.whl (987 kB) Collecting threadpoolctl>=2.0.0 Using cached threadpoolctl-3.1.0-py3-none-any.whl (14 kB) Collecting hydralit-components>=1.0.7 Using cached hydralit_components-1.0.10-py3-none-any.whl Collecting bokeh Using cached bokeh-3.0.3-py3-none-any.whl (16.5 MB) Collecting compress-pickle Using cached compress_pickle-2.1.0-py3-none-any.whl (24 kB) Collecting pickleshare Using cached pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB) Collecting prompt-toolkit<3.1.0,>=3.0.11 Using cached prompt_toolkit-3.0.36-py3-none-any.whl (386 kB) Collecting matplotlib-inline Using cached matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB) Collecting traitlets>=5 Using cached traitlets-5.8.1-py3-none-any.whl (116 kB) Collecting stack-data Using cached stack_data-0.6.2-py3-none-any.whl (24 kB) Collecting pygments>=2.4.0 Using cached Pygments-2.14.0-py3-none-any.whl (1.1 MB) Collecting decorator Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB) Collecting backcall Using cached backcall-0.2.0-py2.py3-none-any.whl (11 kB) Collecting jedi>=0.16 Using cached jedi-0.18.2-py2.py3-none-any.whl (1.6 MB) Collecting pyparsing>=2.2.1 Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB) Collecting fonttools>=4.22.0 Using cached fonttools-4.38.0-py3-none-any.whl (965 kB) Collecting contourpy>=1.0.1 Using cached contourpy-1.0.6-cp38-cp38-win_amd64.whl (163 kB) Collecting kiwisolver>=1.0.1 Using cached kiwisolver-1.4.4-cp38-cp38-win_amd64.whl (55 kB) Collecting cycler>=0.10 Using cached cycler-0.11.0-py3-none-any.whl (6.4 kB) Collecting proglog<=1.0.0 Using cached proglog-0.1.10-py3-none-any.whl (6.1 kB) Collecting decorator Using cached decorator-4.4.2-py2.py3-none-any.whl (9.2 kB) Collecting imageio-ffmpeg>=0.2.0 Using cached imageio_ffmpeg-0.4.8-py3-none-win_amd64.whl (22.6 MB) Collecting imageio<3.0,>=2.5 Using cached imageio-2.24.0-py3-none-any.whl (3.4 MB) Collecting numpy Using cached numpy-1.23.5-cp38-cp38-win_amd64.whl (14.7 MB) Collecting llvmlite<0.40,>=0.39.0dev0 Using cached llvmlite-0.39.1-cp38-cp38-win_amd64.whl (23.2 MB) Collecting tenacity>=6.2.0 Using cached tenacity-8.1.0-py3-none-any.whl (23 kB) Collecting pynndescent>=0.5 Using cached pynndescent-0.5.8-py3-none-any.whl Collecting entrypoints Using cached entrypoints-0.4-py3-none-any.whl (5.3 kB) Collecting toolz Using cached toolz-0.12.0-py3-none-any.whl (55 kB) Collecting jinja2 Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB) Collecting jsonschema>=3.0 Using cached jsonschema-4.17.3-py3-none-any.whl (90 kB) Collecting gitdb<5,>=4.0.1 Using cached gitdb-4.0.10-py3-none-any.whl (62 kB) Collecting lxml Using cached lxml-4.9.2-cp38-cp38-win_amd64.whl (3.9 MB) Collecting bs4 Using cached bs4-0.0.1-py3-none-any.whl Collecting zipp>=0.5 Using cached zipp-3.11.0-py3-none-any.whl (6.6 kB) Collecting parso<0.9.0,>=0.8.0 Using cached parso-0.8.3-py2.py3-none-any.whl (100 kB) Collecting wcwidth Using cached wcwidth-0.2.5-py2.py3-none-any.whl (30 kB) Collecting six>=1.5 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Requirement already satisfied: certifi>=2017.4.17 in c:\users\km195\anaconda3\envs\asoid\lib\site-packages (from requests>=2.4->streamlit~=1.11.0->asoid==0.2.0) (2022.12.7) Collecting charset-normalizer<3,>=2 Using cached charset_normalizer-2.1.1-py3-none-any.whl (39 kB) Collecting idna<4,>=2.5 Using cached idna-3.4-py3-none-any.whl (61 kB) Collecting urllib3<1.27,>=1.21.1 Using cached urllib3-1.26.14-py2.py3-none-any.whl (140 kB) Collecting commonmark<0.10.0,>=0.9.0 Using cached commonmark-0.9.1-py2.py3-none-any.whl (51 kB) Collecting backports.zoneinfo Using cached backports.zoneinfo-0.2.1-cp38-cp38-win_amd64.whl (38 kB) Collecting pytz-deprecation-shim Using cached pytz_deprecation_shim-0.1.0.post0-py2.py3-none-any.whl (15 kB) Collecting tzdata Using cached tzdata-2022.7-py2.py3-none-any.whl (340 kB) Collecting xyzservices>=2021.09.1 Using cached xyzservices-2022.9.0-py3-none-any.whl (55 kB) Collecting PyYAML>=3.10 Using cached PyYAML-6.0-cp38-cp38-win_amd64.whl (155 kB) Collecting asttokens>=2.1.0 Using cached asttokens-2.2.1-py2.py3-none-any.whl (26 kB) Collecting pure-eval Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB) Collecting executing>=1.2.0 Using cached executing-1.2.0-py2.py3-none-any.whl (24 kB) Collecting smmap<6,>=3.0.1 Using cached smmap-5.0.0-py3-none-any.whl (24 kB) Collecting MarkupSafe>=2.0 Using cached MarkupSafe-2.1.1-cp38-cp38-win_amd64.whl (17 kB) Collecting importlib-resources>=1.4.0 Using cached importlib_resources-5.10.2-py3-none-any.whl (34 kB) Collecting pkgutil-resolve-name>=1.3.10 Using cached pkgutil_resolve_name-1.3.10-py3-none-any.whl (4.7 kB) Collecting pyrsistent!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0 Using cached pyrsistent-0.19.3-cp38-cp38-win_amd64.whl (62 kB) Collecting beautifulsoup4 Using cached beautifulsoup4-4.11.1-py3-none-any.whl (128 kB) Collecting soupsieve>1.2 Using cached soupsieve-2.3.2.post1-py3-none-any.whl (37 kB) Building wheels for collected packages: asoid, hdbscan Building wheel for asoid (setup.py) ... done Created wheel for asoid: filename=asoid-0.2.0-py3-none-any.whl size=1950556 sha256=4bd9957b2fa58871774e4bd71e39aae9b51faf60bdfb7e3e5b5192500c0a4003 Stored in directory: c:\users\km195\appdata\local\pip\cache\wheels\5c\a4\05\9c84cdd7c57679cf14ea37eaeb5a5c9ba78cce97f4527639f5 Building wheel for hdbscan (pyproject.toml) ... error error: subprocess-exited-with-error
× Building wheel for hdbscan (pyproject.toml) did not run successfully. │ exit code: 1 ╰─> [40 lines of output] running bdist_wheel running build running buildpy creating build creating build\lib.win-amd64-cpython-38 creating build\lib.win-amd64-cpython-38\hdbscan copying hdbscan\flat.py -> build\lib.win-amd64-cpython-38\hdbscan copying hdbscan\hdbscan.py -> build\lib.win-amd64-cpython-38\hdbscan copying hdbscan\plots.py -> build\lib.win-amd64-cpython-38\hdbscan copying hdbscan\prediction.py -> build\lib.win-amd64-cpython-38\hdbscan copying hdbscan\robust_singlelinkage.py -> build\lib.win-amd64-cpython-38\hdbscan copying hdbscan\validity.py -> build\lib.win-amd64-cpython-38\hdbscan copying hdbscan__init__.py -> build\lib.win-amd64-cpython-38\hdbscan creating build\lib.win-amd64-cpython-38\hdbscan\tests copying hdbscan\tests\test_flat.py -> build\lib.win-amd64-cpython-38\hdbscan\tests copying hdbscan\tests\test_hdbscan.py -> build\lib.win-amd64-cpython-38\hdbscan\tests copying hdbscan\tests\test_prediction_utils.py -> build\lib.win-amd64-cpython-38\hdbscan\tests copying hdbscan\tests\test_rsl.py -> build\lib.win-amd64-cpython-38\hdbscan\tests copying hdbscan\tests__init__.py -> build\lib.win-amd64-cpython-38\hdbscan\tests running build_ext cythoning hdbscan/_hdbscan_tree.pyx to hdbscan_hdbscan_tree.c cythoning hdbscan/_hdbscan_linkage.pyx to hdbscan_hdbscan_linkage.c cythoning hdbscan/_hdbscan_boruvka.pyx to hdbscan_hdbscan_boruvka.c cythoning hdbscan/_hdbscan_reachability.pyx to hdbscan_hdbscan_reachability.c cythoning hdbscan/_prediction_utils.pyx to hdbscan_prediction_utils.c cythoning hdbscan/dist_metrics.pyx to hdbscan\dist_metrics.c building 'hdbscan._hdbscan_tree' extension C:\Users\km195\AppData\Local\Temp\pip-build-env-u7qhkvit\overlay\Lib\site-packages\Cython\Compiler\Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: C:\Users\km195\AppData\Local\Temp\pip-install-47hnnxp4\hdbscan_fcbebbd4c04b4e65b8090b322e6bb107\hdbscan_hdbscan_tree.pyx tree = Parsing.p_module(s, pxd, full_module_name) C:\Users\km195\AppData\Local\Temp\pip-build-env-u7qhkvit\overlay\Lib\site-packages\Cython\Compiler\Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: C:\Users\km195\AppData\Local\Temp\pip-install-47hnnxp4\hdbscan_fcbebbd4c04b4e65b8090b322e6bb107\hdbscan_hdbscan_linkage.pyx tree = Parsing.p_module(s, pxd, full_module_name) C:\Users\km195\AppData\Local\Temp\pip-build-env-u7qhkvit\overlay\Lib\site-packages\Cython\Compiler\Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: C:\Users\km195\AppData\Local\Temp\pip-install-47hnnxp4\hdbscan_fcbebbd4c04b4e65b8090b322e6bb107\hdbscan_hdbscan_boruvka.pyx tree = Parsing.p_module(s, pxd, full_module_name) C:\Users\km195\AppData\Local\Temp\pip-build-env-u7qhkvit\overlay\Lib\site-packages\Cython\Compiler\Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: C:\Users\km195\AppData\Local\Temp\pip-install-47hnnxp4\hdbscan_fcbebbd4c04b4e65b8090b322e6bb107\hdbscan_hdbscan_reachability.pyx tree = Parsing.p_module(s, pxd, full_module_name) C:\Users\km195\AppData\Local\Temp\pip-build-env-u7qhkvit\overlay\Lib\site-packages\Cython\Compiler\Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: C:\Users\km195\AppData\Local\Temp\pip-install-47hnnxp4\hdbscan_fcbebbd4c04b4e65b8090b322e6bb107\hdbscan_prediction_utils.pyx tree = Parsing.p_module(s, pxd, full_module_name) C:\Users\km195\AppData\Local\Temp\pip-build-env-u7qhkvit\overlay\Lib\site-packages\Cython\Compiler\Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: C:\Users\km195\AppData\Local\Temp\pip-install-47hnnxp4\hdbscan_fcbebbd4c04b4e65b8090b322e6bb107\hdbscan\dist_metrics.pxd tree = Parsing.p_module(s, pxd, full_module_name) error: Microsoft Visual C++ 14.0 or greater is required. Get it with "Microsoft C++ Build Tools": https://visualstudio.microsoft.com/visual-cpp-build-tools/ [end of output]
note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for hdbscan Successfully built asoid Failed to build hdbscan ERROR: Could not build wheels for hdbscan, which is required to install pyproject.toml-based projects
(asoid) PS C:\Apps\A-SOID> asoid app asoid : The term 'asoid' is not recognized as the name of a cmdlet, function, script file, or operable program. Check the spelling of the name, or if a path was included, verify that the path is correct and try again. At line:1 char:1