Closed sunta3iouxos closed 2 years ago
Hi @huerqiang , is this fixed in the developmental version?
already fixed in dev version and will be fixed in release version = 1.14.2.
thank for that, I am getting an error updating to the newest version.
library(remotes)
install_github(c("GuangchuangYu/DOSE", "GuangchuangYu/clusterProfiler", "GuangchuangYu/enrichplot" ))
DOSE and clusterprofiler got installed without issues. For enrichplot:
√ checking for file '...\GuangchuangYu-enrichplot-d11b60b/DESCRIPTION' ...
- preparing 'enrichplot':
√ checking DESCRIPTION meta-information ...
- checking for LF line-endings in source and make files and shell scripts
- checking for empty or unneeded directories
- building 'enrichplot_1.13.1.992.tar.gz'
Installing package into ‘.../Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)
* installing *source* package 'enrichplot' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Error: object 'get_aes_var' is not exported by 'namespace:rvcheck'
Execution halted
ERROR: lazy loading failed for package 'enrichplot'
* removing '.../Documents/R/win-library/4.0/enrichplot'
* restoring previous '.../Documents/R/win-library/4.0/enrichplot'
Warning message:
In i.p(...) :
installation of package ‘.../Temp/RtmpGGcB6i/file7170551177/enrichplot_1.13.1.992.tar.gz’ had non-zero exit status
any idea?
@sunta3iouxos YuLab-SMU/clusterProfiler
, YuLab-SMU/DOSE
, YuLab-SMU/enrichplot
@huerqiang I get the following error, only for enrichplot:
* installing *source* package 'enrichplot' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Error: object 'get_aes_var' is not exported by 'namespace:rvcheck'
Execution halted
ERROR: lazy loading failed for package 'enrichplot'
* removing 'C:/Users/trotos/Documents/R/win-library/4.0/enrichplot'
* restoring previous 'C:/Users/trotos/Documents/R/win-library/4.0/enrichplot'
Warning message:
In i.p(...) :
installation of package ‘C:/Users/trotos/AppData/Local/Temp/RtmpewL1YI/file322416577c/enrichplot_1.15.2.9001.tar.gz’ had non-zero exit status
I have a DEG set produced by DeSeq2: I get the sorted ranked with ENSEMBL names (hg38) as:
I generate the enriched list:
then I try to produce the plot:
The ontology is not created for the ego3 enriched list:
Any ideas?
My session: