When using version 4.10.0 of clusterProfiler, the output from the enrichKEGG function shows that the Description column and ID information are identical, which did not happen with version 4.6.0. Is this a bug introduced in the newer version? How can it be resolved? The KEGG database used is internally constructed, with the use_internal_data parameter set to TRUE.
x <- enrichKEGG(geneSet, organism = organism, keyType = 'kegg', pvalueCutoff = 0.05, pAdjustMethod = 'BH', minGSSize = 5, maxGSSize = 2000, qvalueCutoff = 0.2, use_internal_data = T)
When using version 4.10.0 of clusterProfiler, the output from the enrichKEGG function shows that the Description column and ID information are identical, which did not happen with version 4.6.0. Is this a bug introduced in the newer version? How can it be resolved? The KEGG database used is internally constructed, with the use_internal_data parameter set to TRUE.
x <- enrichKEGG(geneSet, organism = organism, keyType = 'kegg', pvalueCutoff = 0.05, pAdjustMethod = 'BH', minGSSize = 5, maxGSSize = 2000, qvalueCutoff = 0.2, use_internal_data = T)