Hello Developer:
I hope this message finds you well. I am using the VirID package in end_to_end mode, and I have successfully run the workflow to generate a phylogenetic tree. However, I encounter an error when attempting to create the Sankey diagram.
During the execution, I received the following error message:
fastp -i /mnt/sda/WWS/Raw_fastq/WS_0718_SY_R1_001.fastq.gz -I /mnt/sda/WWS/Raw_fastq/WS_0718_SY_R2_001.fastq.gz -o WS_0718_SY/assembly_and_basic_annotation/step3_QC_1.fq -O WS_0718_SY/assembly_and_basic_annotation/step3_QC_2.fq -h WS_0718_SY/assembly_and_basic_annotation/step3_QC.html --detect_adapter_for_pe --dedup --dup_calc_accuracy 4 --dont_eval_duplication --low_complexity_filter --thread 60
fastp v0.23.4, time used: 130 seconds
Warning message:
package ‘jsonlite’ was built under R version 4.2.3
Warning message:
package ‘networkD3’ was built under R version 4.2.3
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
Warning message:
package ‘dplyr’ was built under R version 4.2.3
Warning message:
package ‘ggplot2’ was built under R version 4.2.3
Error in data$Node1 : $ operator is invalid for atomic vectors
Calls: data.frame -> unique
Execution halted
sh: 2: 0: not found
sh: 3: 1: not found
sh: 4: 2: not found
sh: 5: 3: not found
sh: 6: 4: not found
sh: 7: ..: Permission denied
sh: 8: 77: not found
sh: 9: 78: not found
sh: 10: 79: not found
sh: 11: 80: not found
sh: 12: 81: not found
sh: 14: [82: not found
The major issue is:
Error in data$Node1 : $ operator is invalid for atomic vectors
I noticed that in the source code, I could not find a specific module for generating Sankey diagrams. I would greatly appreciate your guidance on how to resolve this issue or if there are recommended steps to successfully create a Sankey diagram using VirID.
Hello Developer: I hope this message finds you well. I am using the VirID package in end_to_end mode, and I have successfully run the workflow to generate a phylogenetic tree. However, I encounter an error when attempting to create the Sankey diagram.
During the execution, I received the following error message:
The major issue is:
I noticed that in the source code, I could not find a specific module for generating Sankey diagrams. I would greatly appreciate your guidance on how to resolve this issue or if there are recommended steps to successfully create a Sankey diagram using VirID.
Thank you!