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abacus-gene / paml

PAML is a program package for model fitting and phylogenetic tree reconstruction using DNA and protein sequence data. Please report only **technical issues** on this repository (e.g., compiling, programs abort or do not run at all, etc.). Problems with input data and general questions should be posted at https://groups.google.com/g/pamlsoftware?pli
GNU General Public License v3.0
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Same lnLs in Model A and corresponding null model of the Branch-Site models #49

Closed Jinloong-dream closed 1 month ago

Jinloong-dream commented 2 months ago

hi, guys! I'm in trouble with codeml for positve selection Model A: image image Null model: image image But the results of both are always the same image crazy!

Thanks, Jinloong

sabifo4 commented 1 month ago

Hi there!

As explained in the PAML Wiki, the GitHub repository is aimed at issues related to technical issues. For non-technical questions and debates, there is a PAML discussion group that people are encouraged to use -- you may even find that similar questions to yours have been posted there (e.g., use the search bar and use key words to find the answer to your question). While this issue should have been posted on the PAML discussion group, please find below some guidelines to answer your question.

Without the input files or the control file, it is very hard to troubleshoot this issue. Could you please post this issue on the PAML discussion group and attach your input files so that the PAML community can assist you further? :)

All the best, Sandy