How was the test data simulated?

ablab / TandemTools

Tool for assessing/improving assembly quality in extra-long tandem repeats

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How was the test data simulated? #3

Closed rchikhi closed 3 years ago

rchikhi commented 3 years ago

Hi,

we are looking to use your provided example data for another purpose, and were wondering how the reads were simulated. It seems that test_data/simulated_reads.fasta was produced by running NanoSim on a different reference than test_data/simulated_polished.fa (read headers start with >flanked-sim-tr[..]). Any chance you could please provide the flanked-sim-tr reference file?

thanks in advance,

Rayan

almiheenko commented 3 years ago

Hi Rayan,

Sorry for the delay! I attach the reference file. Please notice that this file contains 200 kbp of flanking non-tandem repeat sequence on both ends.

Best regards, Alla flanked_tandem_repeat.fasta.zip

rchikhi commented 3 years ago

Excellent, cheers Alla!