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abyzovlab
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CNVpytor
a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads
MIT License
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Can I use set annotate without internet access
#237
olya2808
opened
1 week ago
1
Bug: cnvpytor v1.3.1 is not compatible with python 3.12.4
#236
LawrenceLiu023
closed
4 weeks ago
5
sync with master
#235
arpanda
closed
1 month ago
0
Fixing bugs
#234
suvakov
closed
1 month ago
0
Fixing bug
#233
suvakov
closed
1 month ago
0
Update ap_dev
#232
arpanda
closed
1 month ago
0
update code for py12
#231
arpanda
closed
1 month ago
0
Fixing bug related to py12
#230
arpanda
closed
1 month ago
0
mask region
#229
Xscut
closed
1 month ago
4
Ms dev
#228
suvakov
closed
1 month ago
0
Ms dev
#227
suvakov
closed
1 month ago
0
Py12
#226
suvakov
closed
1 month ago
0
Py12
#225
suvakov
closed
1 month ago
0
VCF file
#224
zainabae
opened
1 month ago
7
IndexError: index 8132 is out of bounds axis 0 with size 8132.
#223
tokiboggle
opened
1 month ago
3
Making a mask for T2T-CHM13v2.0 ?
#222
mpiersonsmela
opened
2 months ago
2
No output when I tried to get a merged vcf from multiple sample using cnvpator
#221
zyxNo1
closed
2 months ago
2
likelihood picture drawing problem
#220
LHlearningcode
closed
2 months ago
2
Unable to synchronously flush file
#219
FanHongzeng
closed
2 months ago
1
rest.ensembl.org connect error
#218
jeffchen2000
closed
3 months ago
3
Error calculating dG in regions < 100. Potential Solution
#217
tonynugroholic
opened
4 months ago
0
Question about bin size and bam file
#216
oceancongliu
opened
5 months ago
0
Location example_ref_genome_conf.py in anaconda
#215
RenscoHogers
closed
5 months ago
3
How to interpret merged_calls result from command line
#214
NannapatS
closed
5 months ago
1
deletions far more than duplications
#213
ZYongQi
closed
6 months ago
2
Bin size
#212
zainabae
closed
6 months ago
1
About inputting the type of bam file
#211
oceancongliu
closed
6 months ago
1
histogram command not completing
#210
lucsnip
closed
6 months ago
4
List index out of range
#209
zainabae
closed
6 months ago
2
obtaining integer CN estimates from non-diploid chromosomes
#208
7ehuang
opened
7 months ago
3
CNVpytor ： some questions about the output
#207
ZYongQi
closed
7 months ago
4
CNVpytor Parameters
#206
zainabae
closed
7 months ago
1
Strange results for global manhattan plots
#205
lucsnip
closed
7 months ago
9
haploid genome error
#204
cfz1998
closed
7 months ago
1
Circular plot error
#203
evayfang2019
opened
8 months ago
1
How to extract BAF values by python api?
#202
xiucz
opened
8 months ago
0
Region plot: No data for likelihood. Try with lh_lite parameter.
#201
evayfang2019
closed
8 months ago
2
CNVpytor generating empty tsv call files
#200
lucsnip
closed
8 months ago
4
Many <DUP> has CN=2 and not CN=3
#199
mjlarsen
closed
9 months ago
7
The normalized read depth values
#198
zainabae
closed
10 months ago
3
Can I use CNVpytor software to evaluate the copy number of genes ？
#197
zhoudreames
opened
11 months ago
0
empty call CNV .tsv files
#196
wbsimey
closed
7 months ago
3
exclude scaffolds
#195
wbsimey
closed
11 months ago
1
introduce cluster_map
#194
suvakov
closed
11 months ago
0
deletion event is wrongly assigned as duplication
#193
fsnibs10
opened
12 months ago
3
Eval1
#192
zainabae
closed
1 year ago
5
Updating ms_dev
#191
suvakov
closed
1 year ago
0
CRAM input
#190
gevro
closed
1 year ago
1
pytorDG=0 for everything when using pytorCL=combined_mosaic
#189
trjojack
closed
10 months ago
1
CNVpytor for haploid genomes
#188
GiFleres
opened
1 year ago
0
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