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acil-bwh / ChestImagingPlatform

Chest Imaging Platform (CIP)
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Issues with Region/Type hierarchy #6

Closed rjosest closed 9 years ago

rjosest commented 9 years ago

Just run into a Region/Type hierarchy issue. The issue can be reproduced as follows

GenerateSimpleLungMask -i /Testing/Data/Input/ct-64.nrrd -o /tmp/kk.nrrd ExtractChestLabelMap -r WholeLung -i /tmp/kk.nrrd -o /tmp/kk2.nrrd

I think the issue is related to the fact that Whole Lung has two potential hierarchical groups: Left L + Right L Upper Third + Middle Third + Lower Third

SimpleLungMask produces the second grouping that it does not seem to be properly addressed by itkCIPExtractChestLabelMapImageFilter

NOTE: This has to be tested in the release branch. GenerateSimpleLungMask is using the new convention in the Release Branch.

acil-bwh commented 9 years ago

Latest commit to development branch fixes this issue. CheckSubordinateSuperiorChestRegionRelationship in cipChestConventions has been corrected.