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adigenova / wengan

An accurate and ultra-fast hybrid genome assembler
GNU Affero General Public License v3.0
83 stars 14 forks source link

error #83

Open xiaoxinganlin opened 1 month ago

xiaoxinganlin commented 1 month ago

export ENGAN=/data/work/fxy/wengan-v0.2-bin-Linux/wengan.pl perl ${ENGAN} -x pacraw -a A -s /data/input/Files/fxy/SRR8861483_1.fastq.gz,/data/input/Files/fxy/_1_SRR8861483_2.fastq.gz -l /data/input/Files/fxy/SRR18246375_subreads.fastq.gz -p asm2 -t 20 -g 100g

Can't locate Data/Dumper.pm in @INC (@INC contains: /data/work/fxy/wengan-v0.2-bin-Linux/perl /path/to/your/modules /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at /data/work/fxy/wengan-v0.2-bin-Linux/perl/Wengan/Scheduler/Local.pm line 19. BEGIN failed--compilation aborted at /data/work/fxy/wengan-v0.2-bin-Linux/perl/Wengan/Scheduler/Local.pm line 19. Compilation failed in require at /data/work/fxy/wengan-v0.2-bin-Linux/wengan.pl line 94. BEGIN failed--compilation aborted at /data/work/fxy/wengan-v0.2-bin-Linux/wengan.pl line 94.

Artifice120 commented 4 weeks ago

Not a developer, just passed by this page by chance. Looks like a path was not written down since one of paths says; "/path/to/your/modules"

Singularity image installation would probably be easier