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adoebley / Griffin

A flexible framework for nucleosome profiling of cell-free DNA
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Provide instructions on how to generate the mapability file (or where to download) #1

Closed amcpherson closed 3 years ago

amcpherson commented 3 years ago

Help on where to obtain the mapability file or how to generate would be greatly appreciated!

amcpherson commented 3 years ago

I assume single-read k50 umap from here:https://bismap.hoffmanlab.org/ would work?

adoebley commented 3 years ago

Hi @amcpherson! You can download that file from: https://hgdownload.soe.ucsc.edu/gbdb/hg38/hoffmanMappability/k50.Umap.MultiTrackMappability.bw