adriantich
commented
3 years ago Please let me check! I'll answer soon!
A.
El jue., 22 abr. 2021 13:10, SanniH @.***> escribió:
Hello again!
So I went to run DnoisE with a .csv input and output, but got a similar error to when I used a fasta, where somewhere along the code it doesn't recognize my naming anymore. So I decided to try to run my csv inputs with the name "id" for the otu/esv identifier column as the error seems to point to that direction, and it ran smooth until it began to write the output dir, when it ran into an issue of "ValueError: Length of passed values is 57, index implies 56.". My .csv contains a total 55 columns, with sample columns starting at 4 and ending at 55. Not sure what happened there along the way... This happens with all of my datasets, where the input ncol is one less than the index value implied, and the length of passed values is 2 more than the original ncol.
I've attached a zip file containing my updated .csv (the one with "id" as id entifier col name), the error for when I got the id key error, and the full output of my batch job I get when DnoisE starts to write the outputs. I'm hoping its something as simple as me not saving my csv file right!
csv_input.zip https://github.com/adriantich/DnoisE/files/6357770/csv_input.zip
The key error is not that big a deal, but I thought I'd add it here just in case you want it to be customisable for users, though personally if your future how-to guide tells users to have it named "id" then that solves that problem! :)
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SanniH
Hello again!
So I went to run DnoisE with a .csv input and output, but got a similar error to when I used a fasta, where somewhere along the code it doesn't recognize my naming anymore. So I decided to try to run my csv inputs with the name "id" for the otu/esv identifier column as the error seems to point to that direction, and it ran smooth until it began to write the output dir, when it ran into an issue of "ValueError: Length of passed values is 57, index implies 56.". My .csv contains a total 55 columns, with sample columns starting at 4 and ending at 55. Not sure what happened there along the way... This happens with all of my datasets, where the input ncol is one less than the index value implied, and the length of passed values is 2 more than the original ncol.
I've attached a zip file containing my updated .csv (the one with "id" as id entifier col name), the error for when I got the id key error, and the full output of my batch job I get when DnoisE starts to write the outputs. I'm hoping its something as simple as me not saving my csv file right!
csv_input.zip
The key error is not that big a deal, but I thought I'd add it here just in case you want it to be customisable for users, though personally if your future how-to guide tells users to have it named "id" then that solves that problem! :)