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adriantich / DnoisE

Distance denoise by Entropy
GNU General Public License v3.0
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Installation with conda - No module named 'Levenshtein' #13

Closed evaegelyng closed 2 years ago

evaegelyng commented 2 years ago

When installing DnoisE with conda, there seems to be a problem locating the Levenshtein module ("ModuleNotFoundError: No module named 'Levenshtein')? In my case, this could be fixed by reinstalling python-levenshtein using pip3, but maybe you could check this issue?

Best,

Eva

adriantich commented 2 years ago

Thanks Eva for your comment! We'll try to check it as soon as possible!

Best regards,

Adrià

adriantich commented 2 years ago

Hello Eva, We have now changed some things of the code. The Levenshtein package that we used from https://github.com/ztane/python-Levenshtein is not under mantainament so we have changed it to https://maxbachmann.github.io/Levenshtein/. However, during this week we are still working on the new version of DnoisE that will be released soon. If you clone the DnoisE from the github repository, should work properly. If you prefer the anaconda installation, it will be ready next week hopefully.

Thanks for your feedback and sorry for the delay. We had to fix some bugs and issues.

Adrià

evaegelyng commented 2 years ago

Dear Adrià,

That sounds great – thanks a lot! :-)

I need to fix a small challenge with my pipeline before denoising, so I will just wait for the conda version.

Best,

Eva

adriantich commented 2 years ago

Nice, if something else is wrong in future versions just tell me! Thanks again for the feedback!