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aehrc
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VariantSpark
machine learning for genomic variants
http://bioinformatics.csiro.au/variantspark
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Issue/237
#241
NickEdwards7502
opened
1 month ago
0
hail dependency issue
#240
ChristinaXu2017
closed
2 months ago
1
au.csiro.aehrc.third.hail-is issue
#239
ChristinaXu2017
closed
2 months ago
1
Load vcf bgz
#238
ChristinaXu2017
closed
7 months ago
0
Make VS hail independent for the python API
#237
rocreguant
opened
9 months ago
0
Fix the readme links and video
#236
rocreguant
closed
9 months ago
1
Bump org.apache.spark:spark-core_2.12 from 3.1.2 to 3.3.2.3.3.7180.12-5
#235
dependabot[bot]
opened
1 year ago
0
Bump scipy from 1.6.3 to 1.10.0 in /python
#234
dependabot[bot]
opened
1 year ago
0
Bump scipy from 1.6.3 to 1.10.0 in /dev
#233
dependabot[bot]
opened
1 year ago
0
Install on any machine throws ``` java.lang.IncompatibleClassChangeError```
#232
surak
closed
1 year ago
1
Install on our supercomputer throws ```java.lang.IncompatibleClassChangeError: Inconsistent constant pool data in classfile for class au/csiro/pbdava/ssparkle/spark/SparkApp. Method 'java.lang.String $anonfun$spark$1(au.csiro.pbdava.ssparkle.spark.SparkApp)' at index 118 is CONSTANT_MethodRef and should be CONSTANT_InterfaceMethodRef```
#231
surak
closed
11 months ago
1
Reporting a vulnerability
#230
igibek
closed
1 year ago
0
fit_trees() unable to run due to IncompatibleClassChangeError
#229
chrysania
closed
1 year ago
2
Can we remove the Hail monkey patches after this Hail PR?
#228
danking
closed
1 year ago
1
Bump htsjdk from 2.21.0 to 3.0.1
#227
dependabot[bot]
opened
1 year ago
0
Bump pyspark from 3.1.3 to 3.2.2 in /python
#226
dependabot[bot]
opened
2 years ago
0
Bump pyspark from 3.1.3 to 3.2.2 in /dev
#225
dependabot[bot]
opened
2 years ago
0
run on single chromosomes?
#224
sshanshans
closed
2 years ago
1
organizing the notebooks, and adding the new azure ones
#223
rocreguant
closed
2 years ago
0
removing unnecessary cells
#222
rocreguant
closed
2 years ago
0
adding automatic splitCount threshold selection function
#221
rocreguant
closed
2 years ago
0
update hail init with spark context
#220
rocreguant
closed
2 years ago
0
Bump numpy from 1.21.2 to 1.23.0 in /python
#219
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.21.2 to 1.23.0 in /dev
#218
dependabot[bot]
opened
2 years ago
0
HADOOP ERROR SERVICE AWS....
#217
cmorris2945
closed
2 years ago
9
How to use vcf file?
#216
cmorris2945
closed
2 years ago
4
Simplifying the maven relase and related github actions.
#215
piotrszul
closed
2 years ago
0
Integrate python build with maven and revise deployment with github actions.
#214
piotrszul
closed
2 years ago
0
updated POM
#213
rocreguant
closed
2 years ago
1
Bump numpy from 1.21.2 to 1.22.0 in /python
#212
dependabot[bot]
closed
2 years ago
2
Bump numpy from 1.21.2 to 1.22.0 in /dev
#211
dependabot[bot]
closed
2 years ago
2
Bump pyspark from 3.1.2 to 3.1.3 in /python
#210
dependabot[bot]
closed
2 years ago
0
Covariates implementation and interface
#209
rocreguant
closed
2 years ago
0
Implements p-value calculation from python
#208
rocreguant
closed
2 years ago
0
[#201] Implements p-value (test)
#207
piotrszul
closed
2 years ago
1
Add split variable count to hail output.
#206
piotrszul
closed
3 years ago
0
Add split variable count to hail output
#205
piotrszul
closed
3 years ago
0
optimise VariantSpark for large sample size (n>50K)
#204
natwine
opened
3 years ago
1
Update to Spark 3.1 and Hail 0.2.74
#203
piotrszul
closed
3 years ago
0
python script to extract split variable counts from rf json model
#202
piotrszul
closed
3 years ago
0
automate pvalue calculation in VariantSpark pipeline
#201
natwine
closed
2 years ago
0
Migrate to Spark 3.1
#200
piotrszul
closed
2 years ago
1
Add variable count extraction from json model
#199
piotrszul
closed
3 years ago
0
add p-value calculation to HAIL implementation
#198
natwine
closed
1 year ago
0
Grid Search for Parameter Optimisation
#197
lm-fsng
opened
3 years ago
1
Release 0.10.2
#196
piotrszul
closed
3 years ago
0
Improve release and versioning
#195
piotrszul
closed
3 years ago
0
Improve release and versioning
#194
piotrszul
closed
3 years ago
1
Make the covariate calculation part of RF
#193
BauerLab
closed
2 years ago
3
Update the Cloud Marketplace example Notebooks to include logistic regression covariates
#192
BauerLab
opened
3 years ago
1
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