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aehrc / VariantSpark

machine learning for genomic variants
http://bioinformatics.csiro.au/variantspark
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Clustering sample #165

Closed TaniaCuppens closed 9 months ago

TaniaCuppens commented 4 years ago

Hi,

I am currently testing your tool to cluster a large number of individuals according to their ethnicity or phenotype. I used the "importance" option but this allows to give importance to the variants and not to cluster individuals. What would be the command to be able to do that. Something like what you did in your first publication : O’Brien, A.R., Saunders, N.F.W., Guo, Y. et al. VariantSpark: population scale clustering of genotype information. BMC Genomics 16, 1052 (2015)

Thanks a lot

rocreguant commented 9 months ago

Are you still interested in that?

rocreguant commented 9 months ago

I'm closing the issue since we haven't heard back. Feel free to re-open with this or any new issue :)