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aertslab
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AUCell
AUCell: score single cells with gene regulatory networks
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error while selecting cells by manual threshold
#46
Sara-Tavallaei
opened
3 weeks ago
0
Q: AUCell applicable to imaging-based SRT data?
#45
HelenaLC
opened
2 months ago
0
Remove "rbokeh" as it is removed from Bioconductor.
#44
ghuls
closed
4 months ago
0
Error while running TILPRED
#43
Saumya513
opened
4 months ago
1
At risk of removal from Bioconductor
#42
lshep
opened
5 months ago
9
why maxAUC calculated in such a complicated way ?
#41
kandabarau
closed
6 months ago
0
Why filter gene sets after calculating AUC?
#40
maddygriz
opened
1 year ago
0
R 4.3_Error in .read_block_OLD(x, viewport, as.sparse = as.sparse) : could not find function ".read_block_OLD"
#39
ClemenceHnn
closed
1 year ago
3
Applicability to Bulk RNASeq
#38
robertamezquita
opened
1 year ago
1
could not find function "AUCell_run"
#37
Jiayi-Zheng
opened
1 year ago
2
Error in matrix(ind, nrow = m, ncol = rank, dimnames = dnms) : invalid 'nrow' value (too large or NA)
#36
njtourtillott
opened
1 year ago
0
AUCell_calcAUC function failed, can not find error message
#35
liuyangzzu
opened
1 year ago
0
could not find function "AUCell_run"
#34
ndrubins
closed
1 year ago
0
Binarization thresholds
#33
DHelix
opened
1 year ago
0
Determining 'active' pathways en masse
#32
Dillon214
closed
1 year ago
1
Clustering enrichment results
#31
Dillon214
closed
1 year ago
1
Error and warning in AUCell_exploreThresholds
#30
rythi4
opened
1 year ago
2
Can't find function AUCell_run
#29
anemartinezlarrinaga2898
closed
1 year ago
4
Breaking change in AUCell_buildRankings() on dgCMatrix objects
#28
hpages
opened
2 years ago
7
AUCell_buildRankings() is broken in BioC 3.15
#27
hpages
closed
2 years ago
2
Questions?
#26
s-aibar
opened
2 years ago
0
Questions?
#25
s-aibar
closed
2 years ago
0
Run AUCell_buildRankings on HVG?
#24
aelhossiny
closed
1 year ago
1
Set seed for AUCell build rankings
#23
lucygarner
closed
1 year ago
1
thresholds for comparibility from one dataset to another ?
#22
Lan-h
closed
1 year ago
2
AUCell Threshold setting
#21
Lumskie
closed
1 year ago
1
AUCell ranking test
#20
chansigit
closed
2 years ago
1
Condition comparison in AUCell
#19
kmshort
closed
1 year ago
1
corrected calculation of "outlierOfGlobal"
#18
alexander-7
closed
2 years ago
0
Mistake in "outlierOfGlobal" calculation in priv_auc.assignmnetThreshold_v6.R
#17
alexander-7
closed
2 years ago
1
Added prototype of block processing algorithm.
#16
LTLA
closed
2 years ago
2
should the gene expression matrix be normalised?
#15
helianthuszhu
closed
3 years ago
2
DelayedArray support and block processing
#14
LTLA
closed
2 years ago
1
GO and pathway enrichment analysis
#13
nfancy
closed
1 year ago
1
Error in using multi cores
#12
fchen365
closed
2 years ago
0
Building cell rankings with very large expression matrix
#11
alecorr
closed
3 years ago
1
Valid 'mctype': 'snow' or 'doMC'
#10
XiaofeiSunUCSF
closed
3 years ago
11
Avoid overwriting BiocGenerics::cbind
#9
LTLA
closed
4 years ago
1
determining thresholds
#8
ceesu
closed
3 years ago
1
aucThr and onColor parameter are invalid in AUCell_plotHist function
#7
Sophia409
closed
2 years ago
0
Error in signif(trhAssignment, 3)
#6
hummuscience
closed
5 years ago
3
aucellRankings - merging two object
#5
ltosti
closed
5 years ago
6
Recommended for use on Aggregated data?
#4
daacarri
closed
5 years ago
1
Error in min(thisTrh, 1) : invalid 'type' (list) of argument
#3
jaimicore
closed
5 years ago
0
All zeros for regulon's AUC
#2
topherconley
closed
5 years ago
1
building cell rankings does not work with huge matrices that has to be stored as sparse matrices (e.g.: dgCMatrix).
#1
dweemx
closed
6 years ago
1