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aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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"ERROR 403: Forbidden." when downloading RcisTarget databases from resources.aertslab.org #226

Closed hffqyd closed 2 years ago

hffqyd commented 2 years ago

Thanks for the awesome GRN software.

But when I prepared RcisTarget data for SCENIC according to the tutorial, the "403: Forbidden" error occured.

dbFiles <- c("https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-500bp-upstream-7species.mc9nr.feather",
"https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg19/refseq_r45/mc9nr/gene_based/hg19-tss-centered-10kb-7species.mc9nr.feather")
# mc9nr: Motif collection version 9: 24k motifs

for(featherURL in dbFiles)
{
  download.file(featherURL, destfile=basename(featherURL)) # saved in current dir
}

Could you please fix the URL? Or is there any other places to download the necessary database?

Thank you for your help.

ghuls commented 2 years ago

Download link works here. Can you try again?

hffqyd commented 2 years ago

I had a try, and yes, it' working.

Thank you.