Finding TF activity for each cluster in TSNE

aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

http://scenic.aertslab.org

GNU General Public License v3.0

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Finding TF activity for each cluster in TSNE #232

Closed Lumskie closed 2 years ago

Lumskie commented 2 years ago

Hi all,

I have clustered the data based on TF activity and got various distinct clusters. I would like to look into the difference between the TF activity of each cluster by obtaining a list of TF active in each. How can I extract that data from SCENIC output?

Thanks in advance