search

aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
394 stars 94 forks source link

shiny::runApp NOT FOUND #455

Open TZUwang opened 1 month ago

TZUwang commented 1 month ago

I have already finished

scenicOptions <- runSCENIC_1_coexNetwork2modules(scenicOptions) scenicOptions <- runSCENIC_2_createRegulons(scenicOptions, coexMethod=c("top5perTarget")) scenicOptions <- runSCENIC_3_scoreCells(scenicOptions, exprMat_log) scenicOptions <- runSCENIC_4_aucell_binarize(scenicOptions)

tsneAUC(scenicOptions, aucType="AUC") [1] "int/tSNE_AUC_50pcs_30perpl.Rds"

This is the file I generated image

str(aucellApp) List of 3 $ thresholds: Named num [1:40] 0.0224 0.0347 0.0524 0.0353 0.2378 ... ..- attr(*, "names")= chr [1:40] "E2f7 (39g)" "E2f8 (20g)" "Tfdp1 (11g)" "E2f1 (42g)" ... $ cells : list() $ server :function (input, output, session)

I don't know why i use

aucellApp <- plotTsne_AUCellApp(scenicOptions, exprMat_log) savedSelections <- shiny::runApp(aucellApp) image