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aertslab / scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
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The required file cannot be found #390

Closed LMBei3353 closed 1 month ago

LMBei3353 commented 1 month ago

Hello Dear author, In SCENIC+ Tutorial: SCENIC+ step-by-step in the human cerebellum tutorial, there is a file "GRCh38_STAR_2.7.5_rna/genes.gtf" I do not know how to get, may I ask where to get this file.

SeppeDeWinter commented 1 month ago

Hi

A similar gtf file can be downloaded from: https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/genes/

Best,

Seppe