search

aidenlab / Juicebox

Visualization and analysis software for Hi-C data -
https://aidenlab.org/juicebox
MIT License
246 stars 58 forks source link

Adding header check for 2D annotations #782

Closed johnstonmj closed 5 years ago

johnstonmj commented 5 years ago

Upon display in Juicebox, the first row of a headerless 2D annotation bedpe is absent. Tested and reproduced in Juicebox_1.8.8.exe + Juicebox_1.9.8.exe. The same issue is not present in Juicebox.js My guess is that the first row is skipped as an assumed header line.

I have been working with intersections of bedpe files using bedtools pairtopair. The default result is a headerless bedpe. Now that I am aware of this, it is easy enough to add a header row, but fixing this could help others in the future. Can a header be tested for rather than auto-skipping the first line? Or a headerless option?

Thanks!

sa501428 commented 5 years ago

yes that makes sense (i.e. adding check for header)

sa501428 commented 5 years ago

resolved