aidenlab / juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
http://aidenlab.org
MIT License
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Calculating norms for zoom BP_100000java.lang.ArrayIndexOutOfBoundsException: 1296 #324

Open maize821 opened 1 year ago

maize821 commented 1 year ago

图片 I'm having trouble converting pairs to hic files, this is the content of my pair file, when I use the following command java -Xmx2g -jar juicer_tools.1.9.9_jcuda.0.8.jar pre ./test.pair test.hic mm10 gives the following error `Not including fragment map Start preprocess Writing header Writing body ............................... Writing footer

Finished preprocess

Calculating norms for zoom BP_2500000 Calculating norms for zoom BP_1000000 Calculating norms for zoom BP_500000 Calculating norms for zoom BP_250000 Calculating norms for zoom BP_100000java.lang.ArrayIndexOutOfBoundsException: 1296 at juicebox.tools.utils.original.NormalizationCalculations.computeVC(NormalizationCalculations.java:319) at juicebox.tools.utils.original.NormalizationVectorUpdater.updateHicFile(NormalizationVectorUpdater.java:161) at juicebox.tools.clt.old.PreProcessing.run(PreProcessing.java:121) at juicebox.tools.HiCTools.main(HiCTools.java:96) I speculate that there may be a problem with normalize. When I add-n`, this error will not appear. I hope to get your answer

maize821 commented 1 year ago

图片