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ajay6763 / LitMod2D_2.0_package_dist_users

LitMod2D_2.0 is a tool to unravel the thermal, compositional, density, and seismological structure of the crust and upper mantle (~400 km depth) along cross-sections by integrating geophysical and geochemical dataset in a self-consistence thermodynamic manner.
GNU General Public License v2.0
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After I changed the model, the body disappeared #36

Open Zqgong97 opened 1 year ago

Zqgong97 commented 1 year ago

After I changed my model. the body disappeared. If I refreshed it again, it showed me the topmost body. It already happened many times. Please could you tell me how to resolve it?

3R1F(XL9BC~2X50BA$OSA(6 LC1CP(~I2PTRRUPHNK9T$SQ

ajay6763 commented 1 year ago

Could you send me the litmod.inp bodies_GU.out and bodies_GUI_envelops.out files.

On Fri, May 5, 2023 at 5:13 AM Zqgong97 @.***> wrote:

After I changed my model. the body disappeared. If I refreshed it again, it showed me the topmost body. It already happened many times. Please could you tell me how to resolve it?

[image: 3R1F(XL9BC~2X50BA$OSA(6] https://user-images.githubusercontent.com/130624412/236369960-3c42e548-292d-4dfd-b70e-49c1345b528c.png [image: LC1CP(~I2PTRRUPHNK9T$SQ] https://user-images.githubusercontent.com/130624412/236369967-89ac7ce1-6a83-402f-851f-90a236eaa7e9.png

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Zqgong97 commented 1 year ago

I have many folders. I checked them found the files gone, maybe I  deleted the files by mistake. I found out yesterday that those files can be run again using another folder.  So if I meet the same problem, I will feedback to you, thank you so much.

And I meet anther problem, when I click "run model ", the program will not run. it just like this picture. I have attached the litmod.inp bodies_GU.out and bodies_GUI_envelops.out  files  corresponding to this issue. Please could you tell me how to resolve it or I have something else to pay attention?

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------------------ 原始邮件 ------------------ 发件人: "ajay6763/LitMod2D_2.0_package_dist_users" @.>; 发送时间: 2023年5月5日(星期五) 晚上10:58 @.>; @.**@.>; 主题: Re: [ajay6763/LitMod2D_2.0_package_dist_users] After I changed the model, the body disappeared (Issue #36)

Could you send me the litmod.inp bodies_GU.out and bodies_GUI_envelops.out files.

On Fri, May 5, 2023 at 5:13 AM Zqgong97 @.***> wrote:

> After I changed my model. the body disappeared. If I refreshed it again, > it showed me the topmost body. It already happened many times. Please could > you tell me how to resolve it? > > [image: 3R1F(XL9BC~2X50BA$OSA(6] > <https://user-images.githubusercontent.com/130624412/236369960-3c42e548-292d-4dfd-b70e-49c1345b528c.png&gt; > [image: LC1CP(~I2PTRRUPHNK9T$SQ] > <https://user-images.githubusercontent.com/130624412/236369967-89ac7ce1-6a83-402f-851f-90a236eaa7e9.png&gt; > > — > Reply to this email directly, view it on GitHub > <https://github.com/ajay6763/LitMod2D_2.0_package_dist_users/issues/36&gt;, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ADNUNSMIHSTUU5KBIUEVUQDXERV6JANCNFSM6AAAAAAXWSLDRU&gt; > . > You are receiving this because you are subscribed to this thread.Message > ID: @.***> >

-- Ajay Kumar <https://sites.google.com/site/kumarajay6763/home&gt; Research Gate <https://www.researchgate.net/profile/Ajay_Kumar388&gt; Google Scholar <https://scholar.google.com/citations?hl=en&amp;user=2DdXNWUAAAAJ&gt;

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Zqgong97 commented 1 year ago

The problem happened again that I mentioned in github, and please find attached the relevant documents. Thank you so much again.

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------------------ 原始邮件 ------------------ 发件人: "ajay6763/LitMod2D_2.0_package_dist_users" @.>; 发送时间: 2023年5月5日(星期五) 晚上10:58 @.>; @.**@.>; 主题: Re: [ajay6763/LitMod2D_2.0_package_dist_users] After I changed the model, the body disappeared (Issue #36)

Could you send me the litmod.inp bodies_GU.out and bodies_GUI_envelops.out files.

On Fri, May 5, 2023 at 5:13 AM Zqgong97 @.***> wrote:

> After I changed my model. the body disappeared. If I refreshed it again, > it showed me the topmost body. It already happened many times. Please could > you tell me how to resolve it? > > [image: 3R1F(XL9BC~2X50BA$OSA(6] > <https://user-images.githubusercontent.com/130624412/236369960-3c42e548-292d-4dfd-b70e-49c1345b528c.png&gt; > [image: LC1CP(~I2PTRRUPHNK9T$SQ] > <https://user-images.githubusercontent.com/130624412/236369967-89ac7ce1-6a83-402f-851f-90a236eaa7e9.png&gt; > > — > Reply to this email directly, view it on GitHub > <https://github.com/ajay6763/LitMod2D_2.0_package_dist_users/issues/36&gt;, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ADNUNSMIHSTUU5KBIUEVUQDXERV6JANCNFSM6AAAAAAXWSLDRU&gt; > . > You are receiving this because you are subscribed to this thread.Message > ID: @.***> >

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ajay6763 commented 1 year ago

I cannot see the images that you are sharing.

Zqgong97 commented 1 year ago

I put it in the attachment this time, could you see it?

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------------------ 原始邮件 ------------------ 发件人: "ajay6763/LitMod2D_2.0_package_dist_users" @.>; 发送时间: 2023年5月6日(星期六) 晚上9:55 @.>; @.**@.>; 主题: Re: [ajay6763/LitMod2D_2.0_package_dist_users] After I changed the model, the body disappeared (Issue #36)

I cannot see the images that you are sharing.

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Zqgong97 commented 1 year ago

I always report errors after adjusting my model. the code is like this  Could you tell me where I made a mistake? 

Something is wronge. Look above if LitMod ran without errors. If yes than something is wronge with plotting part. ['/home/Models/4/topo.inp', 'ELEVin'] 2 Types of bodies read: ['normal', 'normal', 'normal', 'normal', 'normal', 'normal', 'normal', 'normal', 'normal', 'normal', 'normal', 'normal', 'normal'] Noumber of bodies read = 13 Start and End of the profile (0.0, 670.0) No of envelops read =  14 [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0, 35.0, 40.0, 45.0, 50.0, 55.0, 60.0, 65.0, 70.0, 75.0, 80.0, 85.0, 90.0, 95.0, 100.0, 105.0, 110.0, 115.0, 120.0, 125.0, 130.0, 130.0, 120.0, 105.0, 95.0, 85.0, 70.0, 55.0, 40.0, 15.0, 0.0, 0.0] c1

fff127

printing density depth [130.0, 130.0, 135.0, 140.0, 145.0, 150.0, 155.0, 160.0, 165.0, 170.0, 175.0, 180.0, 185.0, 190.0, 195.0, 200.0, 205.0, 210.0, 215.0, 220.0, 225.0, 225.0, 215.0, 215.0, 205.0, 200.0, 190.0, 165.0, 145.0, 130.0] c1

fff127

printing density depth [225.0, 225.0, 230.0, 235.0, 240.0, 245.0, 250.0, 255.0, 260.0, 265.0, 270.0, 275.0, 280.0, 285.0, 290.0, 295.0, 300.0, 305.0, 310.0, 315.0, 320.0, 325.0, 330.0, 335.0, 340.0, 345.0, 350.0, 355.0, 360.0, 365.0, 370.0, 375.0, 380.0, 385.0, 390.0, 395.0, 400.0, 405.0, 410.0, 415.0, 420.0, 425.0, 430.0, 435.0, 440.0, 445.0, 450.0, 455.0, 460.0, 465.0, 470.0, 475.0, 480.0, 485.0, 490.0, 495.0, 500.0, 505.0, 510.0, 515.0, 520.0, 525.0, 530.0, 535.0, 540.0, 545.0, 550.0, 555.0, 560.0, 565.0, 565.0, 475.0, 255.0, 225.0] c1

fff127

printing density depth [565.0, 565.0, 570.0, 575.0, 580.0, 585.0, 590.0, 595.0, 600.0, 605.0, 605.0, 600.0, 595.0, 590.0, 590.0, 585.0, 575.0, 570.0, 565.0] c1

fff127

printing density depth [605.0, 605.0, 610.0, 615.0, 620.0, 625.0, 630.0, 635.0, 640.0, 645.0, 650.0, 655.0, 660.0, 665.0, 670.0, 670.0, 635.0, 605.0] c1

fff127

printing density depth [0.0, 15.0, 40.0, 55.0, 70.0, 85.0, 95.0, 105.0, 120.0, 130.0, 130.0, 145.0, 165.0, 190.0, 200.0, 205.0, 215.0, 210.0, 205.0, 195.0, 190.0, 185.0, 175.0, 165.0, 155.0, 135.0, 115.0, 90.0, 65.0, 30.0, 0.0, 0.0] c2

ff983e

printing density depth [195.0, 205.0, 210.0, 215.0, 215.0, 225.0, 225.0, 255.0, 475.0, 565.0, 565.0, 570.0, 575.0, 585.0, 590.0, 590.0, 595.0, 580.0, 570.0, 550.0, 515.0, 485.0, 455.0, 415.0, 385.0, 370.0, 345.0, 280.0, 200.0, 195.0] c2

ff983e

printing density depth [570.0, 580.0, 595.0, 600.0, 605.0, 635.0, 670.0, 670.0, 600.0, 580.0, 570.0] c2

ff983e

printing density depth [0.0, 30.0, 65.0, 90.0, 115.0, 135.0, 155.0, 165.0, 175.0, 165.0, 150.0, 145.0, 135.0, 125.0, 90.0, 40.0, 0.0, 0.0] c3

75cf15

printing density depth [135.0, 145.0, 150.0, 165.0, 175.0, 185.0, 190.0, 195.0, 200.0, 280.0, 345.0, 370.0, 385.0, 415.0, 455.0, 485.0, 515.0, 550.0, 570.0, 580.0, 600.0, 670.0, 670.0, 605.0, 545.0, 510.0, 475.0, 440.0, 415.0, 380.0, 305.0, 255.0, 180.0, 145.0, 135.0] c3

75cf15

printing density depth [0.0, 40.0, 90.0, 125.0, 135.0, 145.0, 180.0, 255.0, 305.0, 380.0, 415.0, 440.0, 475.0, 510.0, 545.0, 605.0, 670.0, 670.0, 570.0, 505.0, 440.0, 395.0, 350.0, 310.0, 250.0, 200.0, 175.0, 135.0, 70.0, 0.0, 0.0] c4

27cfca

printing density depth [0.0, 70.0, 135.0, 175.0, 200.0, 250.0, 310.0, 350.0, 395.0, 440.0, 505.0, 570.0, 670.0, 670.0, 630.0, 595.0, 540.0, 490.0, 445.0, 410.0, 370.0, 330.0, 260.0, 215.0, 190.0, 150.0, 120.0, 85.0, 60.0, 25.0, 0.0, 0.0] c5

1f6ecf

printing density depth [0.0, 25.0, 60.0, 85.0, 120.0, 150.0, 190.0, 215.0, 260.0, 330.0, 370.0, 410.0, 445.0, 490.0, 540.0, 595.0, 630.0, 670.0, 670.0, 670.0, 0.0, 0.0] asthenosphere

800080

printing density depth writing into the bodies.out Total no of bodies saved 13 ['c1', 'c1', 'c1', 'c1', 'c1', 'c2', 'c2', 'c2', 'c3', 'c3', 'c4', 'c5', 'asthenosphere'] running the model 1        ***          *      **>>>>  PROGRAM  LitMod2D  <<<<                                     Version:4.0                                                                                                            Written by:                                 J.C. Afonso(1), H. Zeyen(2) & M. Fernandez(3)                                                                         (1) Macquarie University, Sydney, Australia                (2) University Paris-Sud, Orsay, France                    (3) ICTJA-CSIC, Barcelona, Spain                            Copyright J.C. Afonso (GNU)                                                                                 *          *****

            MEMORY USED BY THE MAIN ARRAYS: 13838500

 INTERCEPTION NOT FOUND: BODY           2  NODE        4136  VERTICES: X1,Z1:   225000.00000000000       -1600.0000000000000            X2,Z2:   215000.00000000000       -3020.0000000000000  INTERCEPTION NOT FOUND: BODY           2  NODE        4137  VERTICES: X1,Z1:   215000.00000000000       -3020.0000000000000            X2,Z2:   215000.00000000000       -3416.0000000000000  INTERCEPTION NOT FOUND: BODY          13  NODE       12919  VERTICES: X1,Z1:   670000.00000000000       -121566.00000000000            X2,Z2:   670000.00000000000       -121566.00000000000

 THE MODEL HAS NO SUBLITHOSPHERIC PERTURBATIONS

...READING THERMODYNAMIC INFORMATION...    Num of different mantle + crust bodies =           1    Type of mantle and crust           (if < 10) bodies =                             99 ...THERMAL STRUCTURE AND HEAT FLOW...       Number of non zero elements in matrix:        51044

...DENSITY, ELEVATION & SEISMIC VELOCITIES...

...GRAVITY AND GEOID ANOMALIES...

...OUTPUT OF RESULTS...

                        ...DONE!!... Something is wronge. Look above if LitMod ran without errors. If yes than something is wronge with plotting part.

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------------------ 原始邮件 ------------------ 发件人: "ajay6763/LitMod2D_2.0_package_dist_users" @.>; 发送时间: 2023年5月6日(星期六) 晚上9:55 @.>; @.**@.>; 主题: Re: [ajay6763/LitMod2D_2.0_package_dist_users] After I changed the model, the body disappeared (Issue #36)

I cannot see the images that you are sharing.

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Zqgong97 commented 1 year ago

Please check your email.

ajay6763 commented 1 year ago

Looking the output I can see that the code ran successfully. It is only the plotting part. Could you please tell me how did you install? Standalone or docker way?

I would suggest you test your installation with the model here https://drive.google.com/file/d/1eA0KXxl0w-6PDswUkAfeHKnmp9uJuzTZ/view?usp=sharing

best Ajay

On Mon, May 8, 2023 at 3:32 AM Zqgong97 @.***> wrote:

Please check your email.

— Reply to this email directly, view it on GitHub https://github.com/ajay6763/LitMod2D_2.0_package_dist_users/issues/36#issuecomment-1537618091, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADNUNSMQFH43R6UKYEPNHNTXFBELJANCNFSM6AAAAAAXWSLDRU . You are receiving this because you commented.Message ID: @.***>

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ajay6763 commented 1 year ago

Looking the output I can see that the code ran successfully. It is only the plotting part. Could you please tell me how did you install? Standalone or docker way?

I would suggest you test your installation with the model here https://drive.google.com/file/d/1eA0KXxl0w-6PDswUkAfeHKnmp9uJuzTZ/view?usp=sharing

best Ajay

On Mon, May 8, 2023 at 3:32 AM Zqgong97 @.***> wrote:

Please check your email.

— Reply to this email directly, view it on GitHub https://github.com/ajay6763/LitMod2D_2.0_package_dist_users/issues/36#issuecomment-1537618091, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADNUNSMQFH43R6UKYEPNHNTXFBELJANCNFSM6AAAAAAXWSLDRU . You are receiving this because you commented.Message ID: @.***>

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Zqgong97 commented 1 year ago

By docker way, and no matter how the model is modified, the output results remain unchanged now.

the code

running the model 1 *****

Zqgong97 commented 1 year ago

The test model can run successfully. It shouldn't be a software installation issue.

ajay6763 commented 1 year ago

To resolve this, you will have to send me the input files that I asked you before. These errors are related to your specific model. Installation is fine.

Please email them to me at ajay6763 [at] gmail.com

On Tue, May 9, 2023 at 11:34 AM Zqgong97 @.***> wrote:

By docker way, and no matter how the model is modified, the output results remain unchanged now.

the code

running the model 1 *****

  • >>>> PROGRAM LitMod2D <<<< *
  • Version:4.0 *
  • *
  • Written by: *
  • J.C. Afonso(1), H. Zeyen(2) & M. Fernandez(3) *
  • *
  • (1) Macquarie University, Sydney, Australia *
  • (2) University Paris-Sud, Orsay, France *
  • (3) ICTJA-CSIC, Barcelona, Spain *
  • Copyright J.C. Afonso (GNU) *

  • *

    MEMORY USED BY THE MAIN ARRAYS: 13838500

INTERCEPTION NOT FOUND: BODY 2 NODE 8358 VERTICES: X1,Z1: 435000.00000000000 1015.0000000000000 X2,Z2: 435000.00000000000 -2498.0000000000000 INTERCEPTION NOT FOUND: BODY 3 NODE 11138 VERTICES: X1,Z1: 575000.00000000000 1556.0000000000000 X2,Z2: 580000.00000000000 1554.0000000000000 INTERCEPTION NOT FOUND: BODY 3 NODE 11137 VERTICES: X1,Z1: 580000.00000000000 1515.0000000000000 X2,Z2: 585000.00000000000 -1734.0000000000000 INTERCEPTION NOT FOUND: BODY 3 NODE 8359 VERTICES: X1,Z1: 435000.00000000000 -2507.0000000000000 X2,Z2: 435000.00000000000 -2498.0000000000000 INTERCEPTION NOT FOUND: BODY 12 NODE 12919 VERTICES: X1,Z1: 670000.00000000000 -120746.00000000000 X2,Z2: 670000.00000000000 -120746.00000000000 No material for element no.11021 at ( 580126., 1529.) No material for element no.11116 at ( 585126., 1547.) No material for element no.23751 at ( 581792., 1526.)

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Zqgong97 commented 1 year ago

It may be a problem with me ploting or modifying the model, although I don't know the specific reason yet, it may be related to my sedimentary layer drawing exceeding 0km. And if there is a lack of sedimentary layer in a certain area, these two areas cannot be connected together in the subsequent modification process. Thank you for your patient answer. I can now run my model, although there is a slight difference between the measured and estimated values. I would greatly appreciate it if you could tell me some knowledge about model modification.

Zqgong97 commented 1 year ago

In the process of operation, I encountered another error, may I ask what is the cause of this problem? 1684397468620

ajay6763 commented 1 year ago

This simply means that the finite element solution for the temperature is not converging. In most cases, we always get convergence, and this could be specifically related to your model. I will be a bit more specific if you could hare your thermal parameters.

Zqgong97 commented 1 year ago

I have attached all my parameters. Please check your email. Thank you so much again.

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------------------ 原始邮件 ------------------ 发件人: "ajay6763/LitMod2D_2.0_package_dist_users" @.>; 发送时间: 2023年5月19日(星期五) 凌晨2:17 @.>; @.**@.>; 主题: Re: [ajay6763/LitMod2D_2.0_package_dist_users] After I changed the model, the body disappeared (Issue #36)

This simply means that the finite element solution for the temperature is not converging. In most cases, we always get convergence, and this could be specifically related to your model. I will be a bit more specific if you could hare your thermal parameters.

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ajay6763 commented 1 year ago

I did not receive any email. Where did you send it to?