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akcorut
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kGWASflow
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
https://github.com/akcorut/kGWASflow/wiki
MIT License
28
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8
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How to read `results/kmers_count/<sample>/kmers_with_strand` table
#37
VanOverbeeke
opened
1 week ago
0
Error in rule extract_kmersGWAS
#36
ChristianDina
opened
1 month ago
0
Results directories (qc and reads)
#35
ChristianDina
opened
1 month ago
0
Something about string expected and not found.
#34
ChristianDina
opened
2 months ago
1
MissingInputException in rule all
#33
Jose-LSP
opened
4 months ago
0
Update README.md
#32
akcorut
closed
4 months ago
0
Increase k-mer size above 31
#31
VanOverbeeke
opened
5 months ago
3
Error in rule kmc_canonical
#30
spaddys
opened
6 months ago
7
Questionable FASTQ format in test dataset
#29
VanOverbeeke
opened
7 months ago
0
Error at __rule_extract_kmersGWAS
#28
SakaMax
opened
8 months ago
0
Error in rule merge_kmers for the test.
#27
Orz-CQ
opened
8 months ago
7
Error in rule multiqc, missing package imp
#26
cedarwarman
opened
10 months ago
10
Manhattan plots fail
#25
Ax3man
opened
10 months ago
4
Error in rule run_kmers_gwas
#24
DavideGue
opened
10 months ago
8
chore(main): release 1.3.0
#23
github-actions[bot]
closed
10 months ago
1
Temporary directory for downloading packages
#22
nirwan1265
closed
5 months ago
2
Stuck at "Downloading and installing remote packages"
#21
DavideGue
closed
11 months ago
1
The truth value of a Series is ambiguous
#20
pmoizerv
closed
5 months ago
2
Error in bowtie2_build
#19
Ax3man
closed
11 months ago
2
`kgwasflow init` doesn't print anything out confirming initialization
#18
ctb
closed
1 year ago
2
is full `snakemake` required? or would `snakemake-minimal` suffice?
#17
ctb
opened
1 year ago
2
Clarification about cutadapt config
#16
Ax3man
closed
1 year ago
3
Can't install via bioconda
#15
Ax3man
closed
1 year ago
8
RuleException:
#14
DavideGue
closed
11 months ago
5
init step ?
#13
ChristianDina
closed
11 months ago
7
Error in rule create_kmers_table
#12
DavideGue
closed
1 year ago
11
chore(main): release 1.2.4
#11
github-actions[bot]
closed
11 months ago
1
chore(main): release 1.2.3
#10
github-actions[bot]
closed
1 year ago
1
chore(main): release 1.2.2
#9
github-actions[bot]
closed
1 year ago
1
chore(main): release 1.2.1
#8
github-actions[bot]
closed
1 year ago
1
chore(main): release 1.2.0
#7
github-actions[bot]
closed
1 year ago
1
chore(main): release 1.2.0
#6
github-actions[bot]
closed
1 year ago
0
Error in rule merge_kmers
#5
jkitony
closed
1 year ago
5
spades step permission denied
#4
Kxpark
closed
1 year ago
2
kmer counting issue Segmentation fault
#3
Kxpark
closed
1 year ago
19
attribute error 'str' object has no attribute 'name'
#2
Kxpark
closed
1 year ago
3
Is kGWASflow operational?
#1
tomvanschaik
closed
1 year ago
2