al-mcintyre mCaller issues

al-mcintyre / mCaller

A python program to call methylation (m6A in DNA) from nanopore signal data

MIT License

43 stars 16 forks source link

issues

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model training with my own nanopore data

#40 dashengzhao opened 4 months ago
1
how to interpret the output of mCaller.py and make_bed.py ?

#39 dashengzhao opened 4 months ago
4
Regarding bed file generated

#38 Proy321 opened 4 months ago
3
Error: could not find sequence for reference contig contig

#37 Domi-Z opened 11 months ago
5
No space left on device

#36 flzh628 opened 1 year ago
2
Parameter selection

#35 Bin-Ma opened 1 year ago
0
update scikit_learn version to make it work

#34 aerijman opened 2 years ago
3
whether the newest models are suited for R9.41 flowcell data

#33 mantonglaw closed 2 years ago
1
Motif context

#32 vahidAK closed 2 years ago
1
How to interpret diff.6 output?

#31 Shians closed 3 years ago
1
Pickle file search path not clear

#30 Shians closed 3 years ago
1
No module named 'sklearn.neural_network.multilayer_perceptron'

#29 Shians opened 3 years ago
13
Fix tsv header issue (contig contig not recognized) and add ambiguous base handling

#28 al-mcintyre opened 3 years ago
0
'could not find sequence for reference contig'

#27 kewei2019 closed 3 years ago
9
Can't run the methylation detection script

#26 gsukrit closed 3 years ago
2
model is not recognizing reference

#25 wshropshire opened 3 years ago
23
nanopolish extract non-functional

#24 wshropshire closed 3 years ago
5
Facing an issue with the command to detect 6mA

#23 aim95 closed 3 years ago
4
Facing an issue for the 'nanopolish eventalign' command

#22 aim95 closed 3 years ago
2
--version bails out when otherwise required args are not given

#21 smoe closed 3 years ago
1
fix python package structure

#20 al-mcintyre opened 3 years ago
0
python3 transition - I have patches locally, how can I help?

#19 smoe opened 4 years ago
28
README.md instructions on make_bed.py: -m argument unknown

#18 smoe closed 4 years ago
1
Release tags?

#17 smoe closed 3 years ago
1
License info missing

#16 smoe closed 4 years ago
2
Training and using a new model fails

#15 cwoehle closed 3 years ago
6
probable mCaller python error

#14 fisseb4 closed 4 years ago
2
Could mCaller detect methylation from other species

#13 lemonsky123 closed 3 years ago
1
mCaller with position file returns no results

#12 russellj7 closed 4 years ago
5
why the m6A result significantly focus on some genome region by using this software

#11 yue9404 closed 5 years ago
7
Problems about run of Test Data

#10 OliverG74 closed 5 years ago
1
Question about m6A result compare with tombo

#9 hygine closed 5 years ago
3
can I replace bwa with minimap2 for ont data?

#8 forrwill closed 4 years ago
5
Do mCaller have 5mC model ?

#7 hygine opened 5 years ago
1
Invalid options for nanopolish index & make_bed.py

#6 pterzian closed 5 years ago
3
Question about trainning custom m6A model

#5 weir12 closed 5 years ago
1
method to get the POSITIONS.txt

#4 xingjianfeng100 closed 5 years ago
3
Added support for gzipped FASTQ files

#3 ralowe closed 6 years ago
0
Errors on running mCaller

#2 clarepacini closed 6 years ago
5
Model for R9.4?

#1 yoshihikosuzuki closed 7 years ago
5