alan-turing-institute affinity-vae issues

alan-turing-institute / affinity-vae

Self-supervised method for disentanglement, clustering and classification of objects in multidimensional image data

BSD 3-Clause "New" or "Revised" License

13 stars 6 forks source link

issues

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Fix matplotlib 3.9.0 failure

#313 jolaem opened 3 months ago
0
Affinity matrix visualisation fails with matplotlib 3.9.0

#312 jolaem opened 3 months ago
0
Decoder: Binarised weights + single conv lager - branch out of develop

#311 crangelsmith opened 4 months ago
0
Binarised decoder - branch out of main

#310 crangelsmith opened 4 months ago
0
Bug fixes

#309 crangelsmith closed 3 months ago
1
Saved output file is ready for inmediate use in a new run

#308 crangelsmith closed 3 months ago
0
Command line flags not overwriting config file

#307 crangelsmith closed 3 months ago
0
Improve README

#306 crangelsmith opened 4 months ago
0
Fix IO errors with corrupted files.

#305 jolaem opened 5 months ago
1
Fixing issue when restarting run with pytorch lightning fabric

#304 crangelsmith closed 5 months ago
0
Training refactoring

#303 crangelsmith closed 4 months ago
2
Consider binarizing the weights in the splat decoder

#302 quantumjot opened 6 months ago
1
278 pytorch lightning

#301 crangelsmith closed 6 months ago
0
Revert "Pytorch lightning fabric"

#300 crangelsmith closed 6 months ago
0
Update README.md

#299 crangelsmith closed 6 months ago
0
Merge paper version to main

#298 crangelsmith closed 6 months ago
1
A patch to this branch which will allow overwriting the setting.vis_f…

#297 marjanfamili closed 6 months ago
1
Refactoring of the codebase

#296 crangelsmith opened 6 months ago
0
Pdf png file save

#295 marjanfamili closed 6 months ago
1
save plots as pdf or png

#294 marjanfamili closed 4 months ago
0
Integrating Caked to Affinity

#293 crangelsmith closed 5 months ago
3
State loading postproc notebook

#292 marjanfamili closed 6 months ago
1
eval mode throwing error for pose_dims = 0

#291 marjanfamili closed 6 months ago
0
model A, not accepting pose_dims = 0

#290 marjanfamili closed 6 months ago
0
pydantic not allowing pose_dims value to be zero

#289 marjanfamili closed 6 months ago
0
Patch napari plugin

#288 marjanfamili closed 6 months ago
1
Revert "Further post process"

#287 marjanfamili closed 7 months ago
2
Further post process

#286 marjanfamili closed 7 months ago
1
last state and meta not selected correctly in Eval

#285 marjanfamili closed 6 months ago
0
numerous warnings in the output of the evaluation mode

#284 marjanfamili closed 4 months ago
1
commening on omics_saver.py

#283 moi-taiga closed 7 months ago
0
Post processing notebook

#282 marjanfamili closed 7 months ago
1
Add tests for the pipeline and the model containing Gaussian splat decoder

#281 marjanfamili opened 8 months ago
0
Differentiable Gaussian splat decoder

#280 marjanfamili closed 7 months ago
1
Pytorch lightning fabric

#279 crangelsmith closed 6 months ago
2
Data and model paralelisation for optimal training

#278 crangelsmith closed 4 months ago
0
Flexible installation

#277 crangelsmith closed 8 months ago
0
Eval flag in input file not registered

#276 marjanfamili closed 4 months ago
1
Error when pose_vis_class is not specified

#275 marjanfamili closed 4 months ago
1
Affinity error in evaluation mode

#274 marjanfamili closed 4 months ago
1
new_out produces error if file full path not declared

#273 marjanfamili closed 3 months ago
0
Type hints

#272 crangelsmith closed 8 months ago
0
Updated toml file for different systems

#271 crangelsmith closed 8 months ago
0
Napari for pose dimentions > 3

#270 crangelsmith closed 4 months ago
0
Add more comprehensive unit tests

#269 jolaem closed 7 months ago
1
Per-class pose visualisation fails when `VIS_POSE_CLASS` is `None`

#268 jolaem closed 7 months ago
0
Evaluation should check if data dimension is compatible with model

#267 jolaem opened 9 months ago
0
Evaluation incorrectly picks out pose dim from model name

#266 jolaem closed 4 months ago
2
New interpolation plot fails with pose=0

#265 jolaem closed 7 months ago
0
Napari widget

#264 crangelsmith closed 9 months ago
1