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alan-turing-institute
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affinity-vae
Self-supervised method for disentanglement, clustering and classification of objects in multidimensional image data
BSD 3-Clause "New" or "Revised" License
13
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6
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Fix matplotlib 3.9.0 failure
#313
jolaem
opened
3 months ago
0
Affinity matrix visualisation fails with matplotlib 3.9.0
#312
jolaem
opened
3 months ago
0
Decoder: Binarised weights + single conv lager - branch out of develop
#311
crangelsmith
opened
4 months ago
0
Binarised decoder - branch out of main
#310
crangelsmith
opened
4 months ago
0
Bug fixes
#309
crangelsmith
closed
3 months ago
1
Saved output file is ready for inmediate use in a new run
#308
crangelsmith
closed
3 months ago
0
Command line flags not overwriting config file
#307
crangelsmith
closed
3 months ago
0
Improve README
#306
crangelsmith
opened
4 months ago
0
Fix IO errors with corrupted files.
#305
jolaem
opened
5 months ago
1
Fixing issue when restarting run with pytorch lightning fabric
#304
crangelsmith
closed
5 months ago
0
Training refactoring
#303
crangelsmith
closed
4 months ago
2
Consider binarizing the weights in the splat decoder
#302
quantumjot
opened
6 months ago
1
278 pytorch lightning
#301
crangelsmith
closed
6 months ago
0
Revert "Pytorch lightning fabric"
#300
crangelsmith
closed
6 months ago
0
Update README.md
#299
crangelsmith
closed
6 months ago
0
Merge paper version to main
#298
crangelsmith
closed
6 months ago
1
A patch to this branch which will allow overwriting the setting.vis_f…
#297
marjanfamili
closed
6 months ago
1
Refactoring of the codebase
#296
crangelsmith
opened
6 months ago
0
Pdf png file save
#295
marjanfamili
closed
6 months ago
1
save plots as pdf or png
#294
marjanfamili
closed
4 months ago
0
Integrating Caked to Affinity
#293
crangelsmith
closed
5 months ago
3
State loading postproc notebook
#292
marjanfamili
closed
6 months ago
1
eval mode throwing error for pose_dims = 0
#291
marjanfamili
closed
6 months ago
0
model A, not accepting pose_dims = 0
#290
marjanfamili
closed
6 months ago
0
pydantic not allowing pose_dims value to be zero
#289
marjanfamili
closed
6 months ago
0
Patch napari plugin
#288
marjanfamili
closed
6 months ago
1
Revert "Further post process"
#287
marjanfamili
closed
7 months ago
2
Further post process
#286
marjanfamili
closed
7 months ago
1
last state and meta not selected correctly in Eval
#285
marjanfamili
closed
6 months ago
0
numerous warnings in the output of the evaluation mode
#284
marjanfamili
closed
4 months ago
1
commening on omics_saver.py
#283
moi-taiga
closed
7 months ago
0
Post processing notebook
#282
marjanfamili
closed
7 months ago
1
Add tests for the pipeline and the model containing Gaussian splat decoder
#281
marjanfamili
opened
8 months ago
0
Differentiable Gaussian splat decoder
#280
marjanfamili
closed
7 months ago
1
Pytorch lightning fabric
#279
crangelsmith
closed
6 months ago
2
Data and model paralelisation for optimal training
#278
crangelsmith
closed
4 months ago
0
Flexible installation
#277
crangelsmith
closed
8 months ago
0
Eval flag in input file not registered
#276
marjanfamili
closed
4 months ago
1
Error when pose_vis_class is not specified
#275
marjanfamili
closed
4 months ago
1
Affinity error in evaluation mode
#274
marjanfamili
closed
4 months ago
1
new_out produces error if file full path not declared
#273
marjanfamili
closed
3 months ago
0
Type hints
#272
crangelsmith
closed
8 months ago
0
Updated toml file for different systems
#271
crangelsmith
closed
8 months ago
0
Napari for pose dimentions > 3
#270
crangelsmith
closed
4 months ago
0
Add more comprehensive unit tests
#269
jolaem
closed
7 months ago
1
Per-class pose visualisation fails when `VIS_POSE_CLASS` is `None`
#268
jolaem
closed
7 months ago
0
Evaluation should check if data dimension is compatible with model
#267
jolaem
opened
9 months ago
0
Evaluation incorrectly picks out pose dim from model name
#266
jolaem
closed
4 months ago
2
New interpolation plot fails with pose=0
#265
jolaem
closed
7 months ago
0
Napari widget
#264
crangelsmith
closed
9 months ago
1
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