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algbio
/
ggcat
Compacted and colored de Bruijn graph construction and querying
MIT License
71
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11
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Adding GGCAT to Bioconda
#48
karel-brinda
opened
1 month ago
0
Issues with -d and -c flags (ggcat doesn't find sample in large color_mapping.in file)
#47
CamilaDuitama
closed
2 months ago
1
access datasets of origin
#46
kamimrcht
opened
4 months ago
2
Problem with GGCAT when using 32 threads
#45
khodor14
opened
4 months ago
1
Change number of dedicated threads
#44
rob-p
opened
5 months ago
2
Same flag `-f` for both `--forward-only` and `--colored-query-output-format` options in queries
#43
fingels
closed
4 months ago
1
Error 68 : Unfinished stream
#42
adamant-pwn
closed
4 months ago
2
GGCAT installation fails when compiling ggcat-api
#41
TimRouze
closed
5 months ago
2
GGCAT API crash when building many graphs in memory from the same instance
#40
tmaklin
closed
4 months ago
2
Is there any way to dump the whole colormap in a readable file ?
#39
fingels
closed
4 months ago
2
Using ggcat-api in an external Rust project fails to build without including `dynamic-dispatch-proc-macro` in Cargo.toml
#38
tmaklin
closed
6 months ago
3
Installation from scratch fail with file examples
#37
fingels
closed
6 months ago
2
Interaction between `-m 0` and `--prefer-memory` causes a crash
#36
tmaklin
closed
4 months ago
1
[Request] Can you provide binaries?
#35
enricorox
opened
7 months ago
0
Fix header dependency issues when building with GCC 13
#34
tmaklin
closed
6 months ago
1
Update to current version of matchtigs
#33
sebschmi
closed
8 months ago
0
Add `-fPIE` to ggcat-cpp-api `Makefile`
#32
rob-p
closed
9 months ago
0
Build fails with `error[E0635]: unknown feature proc_macro_span_shrink`
#31
tmaklin
closed
1 year ago
1
Mac OS fix: convert 4-space indentation to 1 tab
#30
jermp
closed
1 year ago
0
Fixed compilation on Mac OS
#29
jermp
closed
1 year ago
2
Fix C++ API makefile when compiler is not called g++
#28
tmaklin
closed
1 year ago
1
Using nightly Rust is problematic
#27
jnalanko
closed
6 months ago
11
Error compiling using latest rust version
#26
rickbeeloo
closed
1 year ago
2
GGCAT keeps panicking about too many open files
#25
iosfwd
opened
1 year ago
1
different runs return different number of unitigs and distinct color subsets
#24
jermp
opened
1 year ago
6
Enable impl_trait_in_assoc_type feature
#23
jnalanko
closed
1 year ago
0
Fix AsyncSliceQueue
#22
jnalanko
closed
1 year ago
0
is there a way to get the kmer counts of the kmers in the produced unitigs?
#21
shokrof
opened
1 year ago
1
Plans to generate a GFA?
#20
rlorigro
opened
1 year ago
1
Compilation failed with error: `use of unstable library feature 'int_log'`
#19
rlorigro
closed
1 year ago
1
Deadlock during construction?
#18
jnalanko
closed
1 year ago
0
Coloring options for an input file list
#17
tmaklin
opened
1 year ago
4
Graph format issue (?)
#16
pierrepeterlongo
closed
1 year ago
3
Fix query index error
#15
Guilucand
closed
1 year ago
0
Query index shifting
#14
Guilucand
closed
1 year ago
0
Fix compiler error in C++ API.
#13
jnalanko
closed
1 year ago
0
Add experimental api + reorganize sub-crates + fix deadlock
#12
Guilucand
closed
1 year ago
1
Fix missing sequence normalization
#11
Guilucand
closed
1 year ago
0
Error message: index out of bounds: the len is 10833 but the index is 48737
#10
jnalanko
closed
1 year ago
1
Fix jsonl output formatting error in query command. Closes #8.
#9
snystrom
closed
1 year ago
1
query jsonl output generates bad keys
#8
snystrom
closed
1 year ago
0
Fix links for rc symmetric nodes
#7
Guilucand
closed
1 year ago
0
Dev
#6
Guilucand
closed
1 year ago
0
Update Eulertigs citation
#5
sebschmi
closed
1 year ago
0
Dev merge
#4
Guilucand
closed
1 year ago
0
Color set -> color class compression
#3
rob-p
closed
1 year ago
2
code: 24, kind: Uncategorized, message: "Too many open files"
#2
jnalanko
closed
1 year ago
2
installation not working
#1
marade
closed
1 year ago
2