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alipirani88 / Comparative_Genomics

Micro 612 genomics workshop
http://comparative-genomics.readthedocs.io/en/latest/index.html#
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Add -o flag to samtools sort command #19

Closed esnitkin914 closed 6 years ago

esnitkin914 commented 7 years ago

Should the output file have an extension (e.g. .bam)?

alipirani88 commented 7 years ago

Actually, we are using samtools legacy version which doesn't interprets -o as saving output to a file. (-o It will write the final output to stdout rather than .bam)