Closed zenalapp closed 6 years ago
For day 1 afternoon we sort the bam file but never index it. What's the command for indexing the bam file?
Around line 169
Is this the right command?
samtools index Rush_KPC_266__aln_sort.bam
I added this (lines 172 - 175), but please make sure it's right!
We are indexing it after mark duplicates steps. Also i don't see your changes. May be try making a pull request when making any change so that we can keep record of the changes :)
Ohh, thanks!
For day 1 afternoon we sort the bam file but never index it. What's the command for indexing the bam file?
Around line 169
Is this the right command?
samtools index Rush_KPC_266__aln_sort.bam
I added this (lines 172 - 175), but please make sure it's right!