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alipirani88 / Comparative_Genomics

Micro 612 genomics workshop
http://comparative-genomics.readthedocs.io/en/latest/index.html#
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read depth #39

Closed zenalapp closed 6 years ago

zenalapp commented 6 years ago

Could you clarify what "enough read depth" is?

Day 1 afternoon, line 258

"After read mapping, it is important to make sure that the reference bases are represented by enough read depth before making any inferences such as variant calling."

alipirani88 commented 6 years ago

at least 10 reads covering each reference base on an average